Gene detail

Detail information of MD00G1050100 Annotation

Gene ID	Annotation
MD00G1050100	RING/U-box superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0249	regulator of nonsense transcripts 3 phospholipid-transporting ATPase [EC:3.6.3.1] histone H3-K14 acetylation Golgi vesicle budding histone H3-K23 acetylation histone H3-K18 acetylation centromeric protein E

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD00G1050100	mRNA	Chr00	9478919	9486200	-

Sequences

CDS:

MD00G1050100

CTCTATAATCACCTCTCCTGCGTTCTCTCTCCCTCTTTCTTTCCTTCTCTCTCTCTCATCCATTGCTCTCACTTGGGCTTTTTTGTCTCATCCGTTGCGCTCACTTGGCCTTTTTTGTCGCATTCCGGGTTATCTCTTTCGCATTAAATTGGTTTAATAATATAAACCAGTAACTGAAGGAAGAAGGAAAATCAGAGACTCAGAAGAACACAGACAGAAGAGAGTGTGTGCGTGGGAGACGTTTTCTCACCATACCATTTGATCCCGCCGCTTCCGTCTGTCATCTCTCGTCCTCCCCAGTCTACTACCGGCATTGAGTTGATATTCCCGATCTTTTACAACTAGGGTTTTATCTGAACCACCTGTGAACACCATAAAGTGTTTTCTGAGCCCGGTGTATTTGGTGGGATTCGTTGACCCTAATGCAAGGTCAAGGGAGTGGTATTGATACTTTCATTGAAATCACAGATGTTGGGCTTGGATCTCTCTCAAACAGCACTACTATGAGTCAGCAGACTTCTTTGAATAATATGCTAAATCCTGTTGAAAACCGGTTGTCAAGTTATATGGTGACATCTGGTGAGATTCCGTGTTTAAATGCCTCTAGTAACCAGAACTTGAGTGGTTCAGGTGAACCTAGCTCTAGATTGGGTCCAGTTGATGATGATGGAATGAAATTGGGACAAGGTTGGTCATCTCCTTATAGTGCTTGTCCTGTGATTGGTCATAGTTCAGAAGAAAGACGAGTTGAACAAAATATCCTTTTTCCTGGGAGAGCTCTTATTGGAATCAGTGGCAATCAGATTCAAGATGGGCCATCTTTTTCTCAGGGCTTTCAAAATGAAAATATAAATTCTGGATATGTGGGAAGTAGTGGTAATACTGTGCCTGGCATGGAAGATGATATTTCAGGTGGATTAGAAACAGAACAGACGTCTTCTGGTAGTGCTTCACCTGATATTGTTGGGACTTTATCCAGAAGCACCGATTTTCTGGTTGAGGAAAATGATGGGAACCCAGGTTCTTCTTTTGGATCTTGGGGTTTATCGTGCAAGCGAAAGGCCCTTGAGGGTACTTCAGGCCAGGCTTATTCTGGTGGAAGTTCTAGCTCCCTTCCACAAGCTGAAACTAGTGCATGGAATACTGTTTCTGCTCGTTATAGTCCTAGTAATTTAAGTTTATCTACACCGTTGCGTAGTTCTCCTAGTGGTGGTCCTTCAGAACAAAACTCAAGAACCAGGTTTGGTTTGATACTTGGGGCATCTGATACCTTTCCTTCAATAGATGCAACAGGAAATGGAGCAAGCTCACTGCAGGAATTTTTTTGTAGGGGGGCTTGTTCTGGGCCTCAGCAAGAATCTGCTCCATCCAACTTATCATCACAATGGAGGTCAACAACTGCAGCTGCAACAAATTCGGCTGGTCCCCAAAGCCAGTTTCCTGGAATGCATATGAGTGGTTTGTCAGGAAACATGCTTCCTTTTCCTTGGACTGGTGCTTCCAGTTCAAGAGTGGGCAGCTTACCAAGTTCTCTTTTGTCTGGATATAGAGGTGCTGAGTTAAGAGGAGAAGCAAACTTAAGAAGCATTCCCAGAAACAATGTGGAGCATTCAACTTTTGCAACTGCCAGTGATATGAGAAATTCAGCACAGGATCCCACAATTTGGGGTCTGGCCTCTGGAGAGTTAAGCATTTCTGTAGGTGCCCCTTCCTCTTCAAGAAGTAGCCCCAGTTCTGGCATTCGTTTTGTGCCTACTCCTGCATTGATCCGTGCCAACAACTTTCCATCTGAAAATCATCAAAGAACAATAGATTGGTCTTTGTTTCCTTCTATTGATTCTCAACCCGGAGGTCATAGTCATTTTAACTCAGTACCTTCAGGACCTGCTTCCTCACAGGATTCAGGAAGTTCTTCTGGGTCTAATAACCAGGGTCGTCACTTACCATATCCTAGGTCCGCATTCTTGGTGGACAGACAAGGTGATGATGCTCTTAATATGCCCCAGTCACTGCAGGCATTAGCAGCTGACATCGAAGGGAGGCGCCGACTTATATCTGAGATTCGTCAAGTTTTGAATGCTATGCGTAGGGGTGAGAACTTACGCGCCGAGGATTATATGCTCCTTGACCCATTCATATATCATGGCATGGCTGAGATGCACGACAGGCACAGAGACATGCGCCTTGATGTTGATAACATGTCTTATGAGGAACTGCTGGCACTGGGGGAACGTATAGGAGATGTTAGCACTGGACTGAGTGAGGAGACTATTATGAAGTGCATGAAACAGCGAATATTTCTCTGTATTTCAGAAAAATCCCCAGCAGATCTGGAACCATGCTGTGTCTGTCAGGAGGCTTATGCTGATGAGGATGATATTGGCACACTAGATTGTGGGCATCACTTCCACACCAGTTGCATCAAACAATGGCTAATGCAGAAGAATCTGTGCCCGATTTGTAAAACGACAGCCCTGCTTACTTGAAAGGGAAAACCATTGATGGCCAAGCCTGAAATTTGAATTCTTGATGCTGTATCATTAAAAGTGAAAGTTGGGGGAGAATCTAGTCCTCCCTTCTTGTCTGAAACTAACTTTATTTGTGCATGAACTGAGCACCCGTCGCTGGAAAAAAAAAAAATAGAAAGAAGAAACTTTGCTGCGTGCCTCATGAAGGATTTATATATCAGATAGCAAAGGATACATCTTTTTCCCTTTTTTATGACCGTGACTGTAATGAATGTATTTGAATAATGTTTCTGGATTTATGAAGCCTTTGCTGAATTGTAAGATTGACGATTTCATATTCATTGTTACTCGTCAAATGCATGGATCTTGCTGGAGTTCAAAGCATGATCATGCTAGATTGTCGTCGCGGTCTCATATTGTGTTATCGTTTGTGTCTATTCAAATTGTCGACTCGATCAGCTGATTT

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G34040.1	1	MBR2\|MED25 BINDING RING-H2 PROTEIN 2
Prunus persica	Prupe.8G127800.4.p	1	RING/U-box superfamily protein
Prunus persica	Prupe.8G127800.2.p	1	RING/U-box superfamily protein
Prunus persica	Prupe.8G127800.1.p	1	RING/U-box superfamily protein
Pyrus communis	PCP007638.1	1	-
Pyrus x bretschneideri	Pbr034038.3	1	-
Pyrus x bretschneideri	Pbr002435.1	0.683	-
Pyrus x bretschneideri	Pbr002436.1	0.683	-
Rosa multiflora	Rmu_sc0000077.1_g000045.1	1	-
Rubus occidentalis	Ro02_G21461	1	-
Fragaria vesca	mrna02151.1	1	RING/U-box superfamily protein
Populus trichocarpa	Potri.009G100100.1	1	RING/U-box superfamily protein
Populus trichocarpa	Potri.001G304900.1	0.7	RING/U-box superfamily protein
Nicotiana benthamiana	Niben101Scf11837g00003.1	1	RING finger protein 165

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.2	zf-RING_2	639	681	2.10E-11

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	12.8909
SRR5252888	dormant buds	no	dormant buds(0 month)	23.8436
SRR5252889	dormant buds	no	dormant buds(0 month)	24.9819
SRR5252886	dormant buds	no	dormant buds(1 months)	19.6411
SRR5252887	dormant buds	no	dormant buds(1 months)	15.0151
SRR5252884	dormant buds	no	dormant buds(2 months)	19.4757
SRR5252882	dormant buds	no	dormant buds(3 months)	26.4547
SRR5252883	dormant buds	no	dormant buds(3 months)	29.3382
SRR5252880	dormant buds	no	dormant buds(4 months)	25.3482
SRR5252881	dormant buds	no	dormant buds(4 months)	30.7346
SRR5252878	bud break	no	bud break	24.2563
SRR5252879	bud break	no	bud break	19.8499
SRR3744766	flower	no	mature	22.627
SRR3744767	flower	no	mature	23.336
SRR3744768	flower	no	mature	23.5605
SRR6308190	stigmas	no	open flowers	17.2377
SRR6308181	styles	no	open flowers	15.2094
SRR6308188	filaments	no	open flowers	12.1205
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	42.7371
SRR6308192	pollen	no	open flowers	165.592
SRR6308191	petals	no	open flowers	14.4231
SRR6308194	sepals	no	open flowers	12.4679
SRR6308193	receptacles	no	open flowers	11.5485
SRR6308189	ovaries	no	open flowers	14.6723
SRR3384922	fruit	no	1 week after full bloom	6.17728
SRR3384921	fruit	no	2 week after full bloom	6.92426
SRR3384920	fruit	no	3 week after full bloom	11.1472
SRR3384919	fruit	no	4 week after full bloom	11.3137
SRR3384923	fruit	no	5 week after full bloom	11.9087
SRR3384918	fruit	no	6 week after full bloom	11.2862
SRR3384917	fruit	no	8 week after full bloom	11.1955
SRR3384916	fruit	no	10 week after full bloom	12.7679
SRR3384915	fruit	no	12 week after full bloom	13.8006
SRR3384914	fruit	no	14 week after full bloom	11.8699
SRR3384913	fruit	no	16 week after full bloom	11.3857
SRR3384912	fruit	no	18 week after full bloom	12.42
SRR3384911	fruit	no	19 week after full bloom	9.16779
SRR3384910	fruit	no	20 week after full bloom	10.9501
SRR768128	whole fruit	no	25 days post anthesis	13.2786
SRR768129	whole fruit	no	35 days post anthesis	7.74551
SRR768130	whole fruit	no	60 days post anthesis	11.6448
SRR768131	whole fruit	no	87 days post anthesis	14.5474
SRR7343308	immature fruit flesh	no	immature	11.1824
SRR7343309	immature fruit flesh	no	immature	10.9905
SRR6320494	ripe fruit flesh	no	mature	7.7914
SRR5405143	ripe fruit peel	no	mature	11.4569
SRR6320572	ripe fruit peel	no	mature	9.24315
SRR7403504	fruit	uninfected	mature	10.0761
SRR7403506	fruit	uninfected	mature	10.6439
SRR7403507	fruit	uninfected	mature	10.8762
SRR7403500	fruit	infected with penicillium expansum	mature	0.986444
SRR7403501	fruit	infected with penicillium expansum	mature	1.05398
SRR7403508	fruit	infected with penicillium expansum	mature	1.22413
SRR7403502	fruit	infected with penicillium expansum	mature	1.59914
SRR7403503	fruit	infected with penicillium expansum	mature	2.07772
SRR7403505	fruit	infected with penicillium expansum	mature	2.19528
SRR1613973	Central seeds	no	20DAPF	7.25211
SRR1613974	Central seeds	no	20DAPF	7.89723
SRR1613975	Central seeds	no	20DAPF	6.8257
SRR1613976	Lateral seeds	no	20DAPF	5.68733
SRR1613977	Lateral seeds	no	20DAPF	6.77728
SRR1613978	Lateral seeds	no	20DAPF	7.20837
SRR3744786	stem	no	mature	17.4143
SRR3744787	stem	no	mature	15.8718
SRR3744772	stem	no	mature	17.8033
SRX765691	seedling shoot apex	no	4-6 week old seedling	13.3065
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	11.3874
SRR1089478	leaf	Virus-free	plantlets	11.8637
SRR1089477	leaf	ASGV-infected	plantlets	12.9
SRR767660	leaf	uninfected	fully developed	5.64383
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0.510947
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.73933
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	8.33089
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	4.05147
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.48731
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	8.16266
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	5.48179
SRR6308182	young leaf	no	immature leaves	8.55646
SRR3744769	leaf	no	mature	27.6832
SRR3744770	leaf	no	mature	28.8956
SRR3744771	leaf	no	mature	29.235
SRR5405145	leaf	no	mature	9.40896
SRR6320561	leaf	no	mature	5.42965