Gene detail

Detail information of MD00G1058300 Annotation

Gene ID	Annotation
MD00G1058300	Uncharacterised protein family (UPF0497)

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD00G1058300	mRNA	Chr00	10638948	10641413	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G35760.1	1	Uncharacterised protein family (UPF0497)
Prunus persica	Prupe.4G007000.1.p	1	Uncharacterised protein family (UPF0497)
Pyrus x bretschneideri	Pbr000039.1	1	-
Rosa multiflora	Rmu_sc0040466.1_g000001.1	1	-
Rosa multiflora	Rmu_sc0011992.1_g000001.1	1	-
Fragaria vesca	mrna19808.1	1	Uncharacterised protein family (UPF0497)
Solanum lycopersicum	Solyc11g012590.1.1	1	Uncharacterised protein family (UPF0497)
Populus trichocarpa	Potri.006G016900.1	1	Uncharacterised protein family (UPF0497)
Populus trichocarpa	Potri.016G008800.1	0.684	Uncharacterised protein family (UPF0497)
Nicotiana benthamiana	Niben101Scf03541g00021.1	1	CASP-like protein
Oryza sativa	LOC_Os03g10030.1	1	"membrane associated DUF588 domain containing protein, putative, expressed"
Oryza sativa	LOC_Os12g32970.1	1	"membrane associated DUF588 domain containing protein, putative, expressed"
Zea mays	GRMZM2G139852_P01	1	-

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04535.8	DUF588	26	173	1.30E-44

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	43.0964
SRR5252888	dormant buds	no	dormant buds(0 month)	5.27108
SRR5252889	dormant buds	no	dormant buds(0 month)	7.21649
SRR5252886	dormant buds	no	dormant buds(1 months)	5.88424
SRR5252887	dormant buds	no	dormant buds(1 months)	1.50954
SRR5252884	dormant buds	no	dormant buds(2 months)	5.85463
SRR5252882	dormant buds	no	dormant buds(3 months)	9.84402
SRR5252883	dormant buds	no	dormant buds(3 months)	1.31732
SRR5252880	dormant buds	no	dormant buds(4 months)	17.4082
SRR5252881	dormant buds	no	dormant buds(4 months)	12.3395
SRR5252878	bud break	no	bud break	15.1073
SRR5252879	bud break	no	bud break	23.7959
SRR3744766	flower	no	mature	2.74064
SRR3744767	flower	no	mature	3.07727
SRR3744768	flower	no	mature	3.59783
SRR6308190	stigmas	no	open flowers	2.03745
SRR6308181	styles	no	open flowers	4.43178
SRR6308188	filaments	no	open flowers	1.40518
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.180711
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.89892
SRR6308194	sepals	no	open flowers	0.726139
SRR6308193	receptacles	no	open flowers	5.09532
SRR6308189	ovaries	no	open flowers	7.80625
SRR3384922	fruit	no	1 week after full bloom	14.6337
SRR3384921	fruit	no	2 week after full bloom	10.7643
SRR3384920	fruit	no	3 week after full bloom	6.47287
SRR3384919	fruit	no	4 week after full bloom	8.04449
SRR3384923	fruit	no	5 week after full bloom	8.19186
SRR3384918	fruit	no	6 week after full bloom	9.42069
SRR3384917	fruit	no	8 week after full bloom	4.13472
SRR3384916	fruit	no	10 week after full bloom	1.55486
SRR3384915	fruit	no	12 week after full bloom	1.08709
SRR3384914	fruit	no	14 week after full bloom	0.486612
SRR3384913	fruit	no	16 week after full bloom	0.382098
SRR3384912	fruit	no	18 week after full bloom	0.0896448
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	12.427
SRR768129	whole fruit	no	35 days post anthesis	21.1097
SRR768130	whole fruit	no	60 days post anthesis	7.32874
SRR768131	whole fruit	no	87 days post anthesis	1.34546
SRR7343308	immature fruit flesh	no	immature	2.39036
SRR7343309	immature fruit flesh	no	immature	3.34159
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	44.6293
SRR1613974	Central seeds	no	20DAPF	44.2831
SRR1613975	Central seeds	no	20DAPF	46.4471
SRR1613976	Lateral seeds	no	20DAPF	42.5843
SRR1613977	Lateral seeds	no	20DAPF	49.3315
SRR1613978	Lateral seeds	no	20DAPF	42.7877
SRR3744786	stem	no	mature	2.21847
SRR3744787	stem	no	mature	1.93563
SRR3744772	stem	no	mature	1.81913
SRX765691	seedling shoot apex	no	4-6 week old seedling	35.2232
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	41.6137
SRR1089478	leaf	Virus-free	plantlets	16.7174
SRR1089477	leaf	ASGV-infected	plantlets	12.007
SRR767660	leaf	uninfected	fully developed	7.5321
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	20.123
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	16.4881
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	10.1374
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	11.748
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.47898
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.14495
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.60264
SRR6308182	young leaf	no	immature leaves	44.2369
SRR3744769	leaf	no	mature	2.41621
SRR3744770	leaf	no	mature	1.98653
SRR3744771	leaf	no	mature	2.71943
SRR5405145	leaf	no	mature	2.76233
SRR6320561	leaf	no	mature	3.84127