Gene detail

Detail information of MD00G1068300 Annotation

Gene ID	Annotation
MD00G1068300	SU(VAR)3-9 homolog 3

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD00G1068300	mRNA	Chr00	13391674	13396040	+

Sequences

CDS:

MD00G1068300

AAACTTCAAATGGCTGATCCCAAAATTCATTCATCTTCTCTCCATCTTTTCTGCCGCTGCCTTTCTTTTCCCGTAGGCCTTCCTCCTCATCCTCTCCCGTAGCTGCTGCATCTCCAGGTTCGATCTTGATTTCTTCCATAGCCGCTGCATCTCCAGGAGATTAGTCAACTTTGTATCTGCAAGAACTCTGCAAAGATTACTGCTTATTTTGCAATGTATTCTGGTTGAAATGGTTGCAATTTGATGCTGTGACAAGTTTATGTTGTGGCTGTTTCGTAGTGGAGGCAGTCTTTCTTACCGGATTTGTTGTAGCTGAAAACCGTGCTTCTTGCCTGAAACGATTTAATGGAACAAAGTTTAGGTCAAGAGTCTGTTCCTGGTTTTGGGTCACTTGACAAGTCTAAGGTTTTAGATGTAAGGCCTTTGAGGCGTCTTGTTCCGTTGTTCCCGTCAGCTTCTAATAATACTTCATTTTCAACTCCACAAGGTGCTGCTCCTTTCGTTTGTGTTTCTCCTGCTGGCCCTTTCCCACCCGGGGTTGCCCCATTTTTTCCGTTCTTCATTTCACCAGAGTCGCAAAGGCCACTTGAACAAAATCTGCAAACACCTAGTGGTAATGCATCTTTTGTCTTCAACAACCCAATATCAAATGCAGTCCCAATTAATTCATTTAGGACGCCTCCATCCGCAGAAGCTAATGGAGATACTAGGACAGCAAGAAGGCTTGCTCGAAGTCGTGGTCAGCCACAATCCCAAAGTGGGAATGCAGAGGAAGATGGTTTTGATGGAGAAAATACAAGGAAGGTAGGGAGCTCAAGGAGTAAGTTCCGGTCCCAAAAGAGGACAAGGGGTGGCCAGGACATTAATGTTGCTTTGCCTGATGTTGACATTGATGCAATAATTGATAATGTTCTTACAACATATACCAATACATTCCAACAAACTGATGGTGACAGGGAATCGCTTGTATATGCACTCACGTCCTATGACTTGGTGCGAAGAAGGATTACACAAATTGAAGAGATGAAGGAAAGAATACCTGGAGCCCCTAGAACAGGACGCCCCGATCTAAGGGCAGGAACACTCTTCATGAATAAGGGAATTAGGACAAATGCCAAGAAGAGGATTGGTGCAGTGCCTGGTGTTGAAGTCGGGGATATTTTCTTTTTCCGAATGGAACTCTGCTTGGTTGGGTTACATGCTCCAACTATGGGTGGAATTGATTACATGGGAGTCAAGAACAGTACAGAGGAAGAGCCTTTAGCATTGAGCATTGTTTCTTCTGGAGGATATGAGGATTCTGTGGAGGATTCGAATGTGTTGATATACAGTGGCCAAGGTGGTAATGCTAGCAACGATTTCAGGAGAGATAAGGAAATGAAGGATCAGAAGCTTGAAAGGGGTAATCTTGCTTTGGAGAAAAGTTTGCATCGGGGTAATGATGTCAGAGTAATTCGAGGTTTAAAGGATGTATCTAATCCAACTGGGAAGGTATATGTCTATGATGGTCTATATAAAATTCACGAATCATGGGTCGACAAGGGGAAGAGTGGTTGCAATGTATTTAAGTATAAATTGGTAAGGTTACCTGGCCAGCCTGAAGCATTTACCATTTGGAAATCAATTGAACAGTGGAAAGAAGAAACTACTACTACGAGGGTTGGACTTATATTGCCTGACCTTACTTCCGGAGCTGAAAATTTACCTGTTTCCCTGGTAAATGATGTTGATGGTGAGAAAGGCCCTGCACACTTCACATATATTTCTAGCCTGCAGTATTCTAAACCGGTGAATCTTACAGAACCCTCTGATGGATGTCTCTGTATTGGTGGGTGTCTCCCTGGTAATTCCAATTGCTCTTGCATTAAGAAAAATGGAGATTTTCTCCCATATACTGCAAATGGGCTTCTTGTGAACCAAAAATCCTTACTGCATGAATGTGGTCCATCCTGTCAGTGCCCTCCTAATTGTCGGAATCGAGTGTCTCAAAGTGGCCTGAAAGTTCGTCTGGAGGTGTTTAGAACTAAGGATAAAGGTTGGGGTCTGCGGTCTTTGGATCCCATCCGCGCTGGTTCTTTGTTATGTGAATATGCAGGACAAGTTCTTACTATTTCTGGGGTAGAAGAAATGGGGGGTGATTATGAAGACGATTACATTTTCGATGCTACTCGTACCTGTCAGCCACTCGGGGTTCTGCCTGGTGATTCTACAGAGACTTCAAAGGCCCCATTTCCTCTAATTATAAGTGCAAATACTGCTGGAAATGTTGCTCGTTTTATGAATCACAGCTGTTCTCCAAATGTACTTTGGCAGCCAGTCTTAAGGGAAAACAAAAATGAGTCTGACCTCCATATTGCGTTTTACACGGTTGGACACATACCTCCTATGACAGAGTTAACATATGATTATGGGATGGTCCCTCAAGAGAAAGCATACCATAGGAAGAAAGTGTGCCTTTGCGGGTCAATAAAATGCAGAAGCTTCTTTTACTAATGGGTGTATCATATGAGGATGATCTTTGATAAATTATGCTTCTAGAAAAAGTTGGTTTGTATTACTTGGCGGAAAGAAGGGGGTGATGCGGTATGTGTGTCCTTTTGCTGTTTTCATTACCTTGGAAGGCATCTGGTTTCACAGGTATTGAGGAACATCATACTTCCCCCTTGTGACTTTAGTTAATGGGCACATGCGAGATCCATTCTCAGC

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	SET
Epigenetic Regulators	SDG

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.7G021100.2.p	1	SU(VAR)3-9 homolog 3
Prunus persica	Prupe.7G021100.1.p	1	SU(VAR)3-9 homolog 3
Pyrus communis	PCP033927.1	1	-
Rosa multiflora	Rmu_sc0000152.1_g000010.1	1	-
Rubus occidentalis	Ro01_G27324	1	-
Fragaria vesca	mrna03234.1	1	SU(VAR)3-9 homolog 3
Vitis vinifera	GSVIVT01025844001	1	SU(VAR)3-9 homolog 5
Solanum lycopersicum	Solyc10g077070.1.1	1	SU(VAR)3-9 homolog 3
Populus trichocarpa	Potri.006G027600.1	1	SU(VAR)3-9 homolog 3
Populus trichocarpa	Potri.016G025300.1	0.736	SU(VAR)3-9 homolog 3
Nicotiana benthamiana	Niben101Scf09869g01014.1	1	Histone-lysine N-methyltransferase 2A
Nicotiana benthamiana	Niben101Scf10305g00006.1	0.908	Histone-lysine N-methyltransferase 2B

Gene Ontology

GO term	Description	Category
GO:0018024	histone-lysine N-methyltransferase activity	molecular_function
GO:0042393	histone binding	molecular_function
GO:0005634	nucleus	cellular component
GO:0008270	zinc ion binding	molecular_function
GO:0034968	histone lysine methylation	biological_process

KEGG

KO	Description	Enzyme
K11420	euchromatic histone-lysine N-methyltransferase	EC:2.1.1.43

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02182.13	SAD_SRA	261	417	4.40E-49

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.38729
SRR5252888	dormant buds	no	dormant buds(0 month)	13.4124
SRR5252889	dormant buds	no	dormant buds(0 month)	14.6114
SRR5252886	dormant buds	no	dormant buds(1 months)	13.9161
SRR5252887	dormant buds	no	dormant buds(1 months)	13.2711
SRR5252884	dormant buds	no	dormant buds(2 months)	12.3205
SRR5252882	dormant buds	no	dormant buds(3 months)	12.1648
SRR5252883	dormant buds	no	dormant buds(3 months)	8.58124
SRR5252880	dormant buds	no	dormant buds(4 months)	14.8881
SRR5252881	dormant buds	no	dormant buds(4 months)	12.8726
SRR5252878	bud break	no	bud break	18.8386
SRR5252879	bud break	no	bud break	12.2093
SRR3744766	flower	no	mature	12.2414
SRR3744767	flower	no	mature	11.7593
SRR3744768	flower	no	mature	10.9886
SRR6308190	stigmas	no	open flowers	5.48089
SRR6308181	styles	no	open flowers	5.51349
SRR6308188	filaments	no	open flowers	5.02349
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	6.76476
SRR6308192	pollen	no	open flowers	10.4655
SRR6308191	petals	no	open flowers	4.69589
SRR6308194	sepals	no	open flowers	5.75657
SRR6308193	receptacles	no	open flowers	6.47172
SRR6308189	ovaries	no	open flowers	5.54641
SRR3384922	fruit	no	1 week after full bloom	1.52832
SRR3384921	fruit	no	2 week after full bloom	1.36237
SRR3384920	fruit	no	3 week after full bloom	1.48521
SRR3384919	fruit	no	4 week after full bloom	2.0054
SRR3384923	fruit	no	5 week after full bloom	2.03258
SRR3384918	fruit	no	6 week after full bloom	1.95541
SRR3384917	fruit	no	8 week after full bloom	1.49221
SRR3384916	fruit	no	10 week after full bloom	1.91231
SRR3384915	fruit	no	12 week after full bloom	1.67372
SRR3384914	fruit	no	14 week after full bloom	1.86376
SRR3384913	fruit	no	16 week after full bloom	1.77032
SRR3384912	fruit	no	18 week after full bloom	1.62812
SRR3384911	fruit	no	19 week after full bloom	2.1352
SRR3384910	fruit	no	20 week after full bloom	4.06722
SRR768128	whole fruit	no	25 days post anthesis	4.95072
SRR768129	whole fruit	no	35 days post anthesis	2.34132
SRR768130	whole fruit	no	60 days post anthesis	4.39117
SRR768131	whole fruit	no	87 days post anthesis	7.9627
SRR7343308	immature fruit flesh	no	immature	4.95345
SRR7343309	immature fruit flesh	no	immature	5.64608
SRR6320494	ripe fruit flesh	no	mature	14.1112
SRR5405143	ripe fruit peel	no	mature	13.4949
SRR6320572	ripe fruit peel	no	mature	8.00368
SRR7403504	fruit	uninfected	mature	8.56395
SRR7403506	fruit	uninfected	mature	8.76496
SRR7403507	fruit	uninfected	mature	8.73511
SRR7403500	fruit	infected with penicillium expansum	mature	8.22488
SRR7403501	fruit	infected with penicillium expansum	mature	7.28498
SRR7403508	fruit	infected with penicillium expansum	mature	7.60112
SRR7403502	fruit	infected with penicillium expansum	mature	7.44391
SRR7403503	fruit	infected with penicillium expansum	mature	6.60367
SRR7403505	fruit	infected with penicillium expansum	mature	7.61655
SRR1613973	Central seeds	no	20DAPF	2.72737
SRR1613974	Central seeds	no	20DAPF	3.13733
SRR1613975	Central seeds	no	20DAPF	2.39331
SRR1613976	Lateral seeds	no	20DAPF	2.49544
SRR1613977	Lateral seeds	no	20DAPF	2.36963
SRR1613978	Lateral seeds	no	20DAPF	2.7286
SRR3744786	stem	no	mature	11.651
SRR3744787	stem	no	mature	11.7641
SRR3744772	stem	no	mature	11.2755
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.51787
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	7.01948
SRR1089478	leaf	Virus-free	plantlets	3.58293
SRR1089477	leaf	ASGV-infected	plantlets	5.51365
SRR767660	leaf	uninfected	fully developed	2.46311
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.66061
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.30015
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.80735
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.61673
SRR6308182	young leaf	no	immature leaves	4.55507
SRR3744769	leaf	no	mature	12.8626
SRR3744770	leaf	no	mature	14.212
SRR3744771	leaf	no	mature	12.4781
SRR5405145	leaf	no	mature	8.52287
SRR6320561	leaf	no	mature	8.65617