Gene detail

Detail information of MD00G1075500 Annotation

Gene ID	Annotation
MD00G1075500	ferredoxin 3

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD00G1075500	mRNA	Chr00	15266000	15268271	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Solanum lycopersicum	Solyc11g068430.1.1	1	ferredoxin 3
Oryza sativa	LOC_Os01g64120.1	1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"
Oryza sativa	LOC_Os05g37140.1	1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"
Zea mays	GRMZM2G053458_P01	1	protein_coding

Gene Ontology

GO term	Description	Category
GO:0051536	iron-sulfur cluster binding	molecular_function
GO:0022900	electron transport chain	biological_process
GO:0009055	electron carrier activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00111.23	Fer2	53	126	1.00E-19

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	154.004
SRR5252888	dormant buds	no	dormant buds(0 month)	6.51156
SRR5252889	dormant buds	no	dormant buds(0 month)	10.372
SRR5252886	dormant buds	no	dormant buds(1 months)	4.36559
SRR5252887	dormant buds	no	dormant buds(1 months)	6.71545
SRR5252884	dormant buds	no	dormant buds(2 months)	5.84977
SRR5252882	dormant buds	no	dormant buds(3 months)	7.82267
SRR5252883	dormant buds	no	dormant buds(3 months)	11.9338
SRR5252880	dormant buds	no	dormant buds(4 months)	8.78296
SRR5252881	dormant buds	no	dormant buds(4 months)	11.1569
SRR5252878	bud break	no	bud break	13.2193
SRR5252879	bud break	no	bud break	11.9642
SRR3744766	flower	no	mature	46.8353
SRR3744767	flower	no	mature	44.443
SRR3744768	flower	no	mature	45.0796
SRR6308190	stigmas	no	open flowers	28.5077
SRR6308181	styles	no	open flowers	33.6689
SRR6308188	filaments	no	open flowers	55.5191
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	44.4278
SRR6308192	pollen	no	open flowers	6.99172
SRR6308191	petals	no	open flowers	58.8136
SRR6308194	sepals	no	open flowers	32.1118
SRR6308193	receptacles	no	open flowers	59.0463
SRR6308189	ovaries	no	open flowers	36.2766
SRR3384922	fruit	no	1 week after full bloom	20.6003
SRR3384921	fruit	no	2 week after full bloom	19.1272
SRR3384920	fruit	no	3 week after full bloom	11.7806
SRR3384919	fruit	no	4 week after full bloom	13.7858
SRR3384923	fruit	no	5 week after full bloom	15.3335
SRR3384918	fruit	no	6 week after full bloom	9.98558
SRR3384917	fruit	no	8 week after full bloom	22.1794
SRR3384916	fruit	no	10 week after full bloom	31.294
SRR3384915	fruit	no	12 week after full bloom	34.4699
SRR3384914	fruit	no	14 week after full bloom	43.4417
SRR3384913	fruit	no	16 week after full bloom	36.5634
SRR3384912	fruit	no	18 week after full bloom	53.7027
SRR3384911	fruit	no	19 week after full bloom	40.4073
SRR3384910	fruit	no	20 week after full bloom	42.692
SRR768128	whole fruit	no	25 days post anthesis	8.12868
SRR768129	whole fruit	no	35 days post anthesis	11.3391
SRR768130	whole fruit	no	60 days post anthesis	51.1679
SRR768131	whole fruit	no	87 days post anthesis	15.6798
SRR7343308	immature fruit flesh	no	immature	7.58204
SRR7343309	immature fruit flesh	no	immature	5.95006
SRR6320494	ripe fruit flesh	no	mature	52.4293
SRR5405143	ripe fruit peel	no	mature	88.3592
SRR6320572	ripe fruit peel	no	mature	121.046
SRR7403504	fruit	uninfected	mature	125.378
SRR7403506	fruit	uninfected	mature	127.086
SRR7403507	fruit	uninfected	mature	124.366
SRR7403500	fruit	infected with penicillium expansum	mature	200.825
SRR7403501	fruit	infected with penicillium expansum	mature	210.676
SRR7403508	fruit	infected with penicillium expansum	mature	205.304
SRR7403502	fruit	infected with penicillium expansum	mature	175.535
SRR7403503	fruit	infected with penicillium expansum	mature	153.311
SRR7403505	fruit	infected with penicillium expansum	mature	173.185
SRR1613973	Central seeds	no	20DAPF	49.8938
SRR1613974	Central seeds	no	20DAPF	39.4685
SRR1613975	Central seeds	no	20DAPF	48.7433
SRR1613976	Lateral seeds	no	20DAPF	34.3944
SRR1613977	Lateral seeds	no	20DAPF	45.5256
SRR1613978	Lateral seeds	no	20DAPF	41.988
SRR3744786	stem	no	mature	41.0537
SRR3744787	stem	no	mature	43.3614
SRR3744772	stem	no	mature	38.3894
SRX765691	seedling shoot apex	no	4-6 week old seedling	25.8316
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	29.5014
SRR1089478	leaf	Virus-free	plantlets	53.383
SRR1089477	leaf	ASGV-infected	plantlets	53.4918
SRR767660	leaf	uninfected	fully developed	57.4755
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	1.10686
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	38.9951
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	171.914
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	26.5262
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	278.19
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	116.836
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	130.315
SRR6308182	young leaf	no	immature leaves	39.6975
SRR3744769	leaf	no	mature	33.9532
SRR3744770	leaf	no	mature	33.1812
SRR3744771	leaf	no	mature	32.8887
SRR5405145	leaf	no	mature	8.75351
SRR6320561	leaf	no	mature	7.53449