Gene detail

Detail information of MD00G1078300 Annotation

Gene ID	Annotation
MD00G1078300	homolog of histone chaperone HIRA

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0494	HIRA spindle pole microtubule organizing center chromatin tubulin binding arsenate reductase (glutaredoxin) activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD00G1078300	mRNA	Chr00	15580886	15599128	-

Sequences

CDS:

MD00G1078300

GCATAAGAGAAAGAAAGAAAGGACCTCACTCTCCCAACAATCTCTCAGAATCTCTCGAATCTCCCAATCTGTCTCAAATCTCCAGCCTCCCAATCTGTCTCAAATCTCCAGCCTCTTCTGCCACACAAAGGTTCTGGAAATAAGTAGCAGAGATGATTGCAGAGAAGCCCAGCTGGATCAGACATGAGGGAATGCAAATTTTCTCCATTGACGTTCAACCTGGTGGACTTAGGCTTGCCACTGGTGGGGGTGATCACAAGGTGCGGGTATGGAACATGAAATCCCTTGGCAGGGATTTGGATAATGAAGAATCATCAGCCCAGAGGCTACTCGCAACTCTCCGTGATCACTTTGGTTCTGTGAATTGTGTTAGGTGGGCTAAGCATGGTCGGTTTGTTGCATCAGGATCAGATGACCAAGTGATTCTAATTCATGAAAGAAAGCCTGGTTCAGGAACCACTGAGTTTGGCAGTGGAGAGCCACCTGACCTTGAAAATTGGAAAGTTGCAATGACTTTGAGAGGGCATACTGCAGATGTGGTGGATCTTAATTGGTCTCCAGATGACTCGATGTTGGCCAGTGGAAGTTTAGATAACACTATACACATCTGGAACATGAGCAATGGTATTTGCACTGCTGTTCTGAGGGGTCACTCTAGCCTGGTTAAAGGAGTTACTTGGGATCCTATTGGCTCCTTCATAGCAAGTCAGTCAGATGATAAAACTGTAATTATTTGGCGAACAAGTGACTGGAGTCTTGTGCACAGGACAGACGGCCATTGGCAAAAATCACTTGGATCTACCTTTTTCAGGCGGTTGGGATGGTCCCCTTGTGGCCACTTCATTACTACCACTCACGGATTCCAGAAACCAAGGCATTCTGCCCCTGTTCTAGAGAGAGGGGAATGGTCTGCTACATTTGACTTCTTAGGACATAATGCCCCTGTGATTGTAGTGAAGTTTAACCATTCAATGTTTAGGAGGAACGTTTCCAATGCTCAGGAAAAAGCTGCACCCGTTGGGTGGACTAATGGTGCTTCAAAGACAGGAGGAAAAGAGAAAGAACCACAACCTTATAATGTCATTGCTATTGGGAGTCAGGACCGGACTATAACAGTGTGGACTACTGCAAGTCCCCGACCCCTCTTCGTAGCAAAGCATTTCTTTACTCAAAGTGTTGTGGATTTATCCTGGAGCCCTGATGGTTATTCACTTTTTGCGTGTTCTTTGGATGGTTCAGTGGCAACTTTCCATTTTGATGTTAAAGAACTTGGCAACCGTTTAAGTGATGCTGAACTGGATGAATTGAAGAGAAACCGTTATGGTGATGTTAGGGGTCGGCAAGCAAATTTAGCTGAAAGCCCAGCTCAATTATTGCTCGAAGCAGCATCTGCTAAGCAAGCCCCAAGCAAAAAAGTGATTCTGGATGTTCAGCAAAACCAGACAGTTGTAAAACCTTCTGTTGATGCAACGGTTGCAACAAAAACTTCTGCAGATGGCTTAAATAAGGTTTCGATGCCTGCCAGAATTTCCAGTCCTGTGAAGCAGAGGGAATATAGACGCCCTGATGGTAGAAAGAGGATTATTCCAGAAGCAGTTGGGGTACCTCTGCAGCAGGAAAATATTTCTGCTGGGGTTCAGACCCAGGCACTTGATTTCCCTTCTATGCCTTCTGATAAAAAAAATGATGAGAATGGGTTAATTGCAGCTGATAGTGGCATCAAAGAAACATCTATTAGGGGAGCAATTGGCAGAAGCGCTGAAATAAAGGAGGGACATGGGGTAACTGCTAGAGCTATGATTACCAAAAGCCTTGTTATTGAGAAGGTTCCTGCCTCCACAGGTGGAGATGAAAGCATAGCTGTGGAACAGTCGGGGAATTTGAAGGCTTCTAGTTTGGCAGGTTCTTCATGTTCCACTCTTTCAATTAGGGTGCTAGATAGGAAAGAAGGAGAAGGCAATGTACCAATTTGCTTGGAAGCTCGACCTCGGGAACACGCTGCAAACGACATTGTTGGCATGGGAAATACATTTATCATGAAAGAAACAGAAATTACTTGCACAAGAGGGTTGCAAACTCTTTGGTCAGATAGGATATCAGGGAAAGTCACTGTTTTAGCTGGAAACGCAAACTTCTGGGCTGTTGGGTGTGAAGATGGATGCATACAGGTTTACACAAAGTGTGGGAGGCGTGCTATGCCAACTATGATGGTAGGATCTGCAGCAATATTTATAGATTGTGACGAGTGCTGGAAATTATTTTTGGTCACAAGAAAAGGATCCTTTTATGTATGGGATCTATTAAAGCGGAATTGCCTCCTCCATGACTCATTGGCATCTCTGGTCGCTTCAAACCCAAACCCATCTGCAAAAGACGCAGGTGTGATCAAAGTTATATCAGCAAAGCTATCAAGATCTGGTTCACCTCTTGTTGTTCTTGCCACTCGCCATGCCTTCCTCTTTGATATTAGCCTGATGTGTTGGCTTAGGGTTGCAGATGATTGCTTTCCTGGGTCAAATTTTGCAAGCTCTTGGCATTCGGGTTCAGCTCAGGGTGGTGAGCTGGCTGCTTTGCAAGTTGATGTTAGGAAATATGTGGCCAGAAAGCCAGGTTGGAGCAGGGTAACAGATGATGGAGTGCAGACACGTGCTCACTTGGAGGCTCAGTTAGCTTCCTCGCTAGCATTAAAGTCAGCTAAAGATTATCGCCAATGCCTTCTATCATATATACGCTTCCTTGCAAGGGAAGCAGATGAGTCTCGTTTACGAGAAGTGTGTGAGAGTTTTCTTGGACCTCCAACTGGGATGGTGGACGATACAACTTTAGATTTAAACAACTCGGCATGGGATCCTTGTGTGCTTGGAATGAGGAAACATAAACTTTTACGAGAAGATATCCTTCCGGCAATGGCTTCAAATAGAAAAGTACAGAGATTGCTTAATGAATTCATGGATCTCATTTCCGAATATGAAAGCGCTGAAACAAATATAGAGAAAAAGATTCAAACTTCGCTGACAGCACGTCAACCGGCAGCTGATGAAATGGACTCTGCTCCTTCTAGGACAAATGAAATGGACATTGTACCTGCAGCACCAGAGAAAACGAAGTCTGTTCCTGCTTCAACTGACCAAAAGGACTCTTCCCAGCTAGCAACAGATGAAGAAAATTCTGCTCCGGTAGCAGAAGACAAAGTTAATTCAGATCCACCAATGGGCAATCAAGTTAGTGAAGCTGCACAAGATGCAGGTTCTTGAGTTTTGCATCTCGGAAATGCAGAAAACCGGACTTTCCAAATGCAGTGTATCATAATGTAGCCGGCTTGGTGGATCTTGCTTGTACATTATTCGGTGTTATCCGAATTAAGGTGGCTTTCTCCTGAAAAAACTTGTTTTGTTGAGTGTCCTACTAGGAGAGCCTGCCATAAGGCGCCGATGAACACCTCTCTCTGTACGATTACGCTGTGTAATTTGTTGATAATATTTTTCTTAAATTATTCATAATATTTTACTCATTTAAGGAATCAGGCTTTTTGGTTGCCAATAGTGGTTGG

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD
Epigenetic Regulators	HIRA

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.8G049600.2.p	1	homolog of histone chaperone HIRA
Prunus persica	Prupe.8G049600.3.p	1	homolog of histone chaperone HIRA
Prunus persica	Prupe.8G049600.1.p	1	homolog of histone chaperone HIRA
Pyrus communis	PCP017939.1	1	-
Pyrus x bretschneideri	Pbr030862.1	1	-
Rosa multiflora	Rmu_sc0001158.1_g000004.1	1	-
Rubus occidentalis	Ro03_G20399	1	-
Fragaria vesca	mrna29486.1	1	homolog of histone chaperone HIRA
Vitis vinifera	GSVIVT01036170001	1	homolog of histone chaperone HIRA
Populus trichocarpa	Potri.004G184900.1	1	homolog of histone chaperone HIRA
Populus trichocarpa	Potri.009G144800.1	0.652	homolog of histone chaperone HIRA
Nicotiana benthamiana	Niben101Scf08643g01003.1	1	Protein HIRA
Oryza sativa	LOC_Os09g39420.1	1	"WD domain, G-beta repeat domain containing protein, expressed"
Zea mays	GRMZM2G023625_P01	1	homolog of histone chaperone HIRA

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	cellular component
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.55036
SRR5252888	dormant buds	no	dormant buds(0 month)	13.9998
SRR5252889	dormant buds	no	dormant buds(0 month)	13.2973
SRR5252886	dormant buds	no	dormant buds(1 months)	13.5979
SRR5252887	dormant buds	no	dormant buds(1 months)	12.2423
SRR5252884	dormant buds	no	dormant buds(2 months)	16.356
SRR5252882	dormant buds	no	dormant buds(3 months)	13.1999
SRR5252883	dormant buds	no	dormant buds(3 months)	15.061
SRR5252880	dormant buds	no	dormant buds(4 months)	14.8919
SRR5252881	dormant buds	no	dormant buds(4 months)	14.1983
SRR5252878	bud break	no	bud break	13.5967
SRR5252879	bud break	no	bud break	10.0954
SRR3744766	flower	no	mature	3.40157
SRR3744767	flower	no	mature	2.88298
SRR3744768	flower	no	mature	2.71642
SRR6308190	stigmas	no	open flowers	4.44993
SRR6308181	styles	no	open flowers	3.86652
SRR6308188	filaments	no	open flowers	3.66195
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.04435
SRR6308192	pollen	no	open flowers	7.83299
SRR6308191	petals	no	open flowers	3.72942
SRR6308194	sepals	no	open flowers	3.49052
SRR6308193	receptacles	no	open flowers	3.40648
SRR6308189	ovaries	no	open flowers	3.78237
SRR3384922	fruit	no	1 week after full bloom	2.48465
SRR3384921	fruit	no	2 week after full bloom	2.83485
SRR3384920	fruit	no	3 week after full bloom	2.04811
SRR3384919	fruit	no	4 week after full bloom	2.22722
SRR3384923	fruit	no	5 week after full bloom	2.23053
SRR3384918	fruit	no	6 week after full bloom	2.54564
SRR3384917	fruit	no	8 week after full bloom	2.5305
SRR3384916	fruit	no	10 week after full bloom	1.95674
SRR3384915	fruit	no	12 week after full bloom	2.43096
SRR3384914	fruit	no	14 week after full bloom	2.06578
SRR3384913	fruit	no	16 week after full bloom	1.79841
SRR3384912	fruit	no	18 week after full bloom	2.20892
SRR3384911	fruit	no	19 week after full bloom	2.07101
SRR3384910	fruit	no	20 week after full bloom	1.93839
SRR768128	whole fruit	no	25 days post anthesis	3.3492
SRR768129	whole fruit	no	35 days post anthesis	2.63979
SRR768130	whole fruit	no	60 days post anthesis	2.5859
SRR768131	whole fruit	no	87 days post anthesis	3.44368
SRR7343308	immature fruit flesh	no	immature	2.90647
SRR7343309	immature fruit flesh	no	immature	2.89825
SRR6320494	ripe fruit flesh	no	mature	2.5432
SRR5405143	ripe fruit peel	no	mature	3.23391
SRR6320572	ripe fruit peel	no	mature	2.55425
SRR7403504	fruit	uninfected	mature	2.51511
SRR7403506	fruit	uninfected	mature	2.11758
SRR7403507	fruit	uninfected	mature	2.38934
SRR7403500	fruit	infected with penicillium expansum	mature	0.901049
SRR7403501	fruit	infected with penicillium expansum	mature	0.573058
SRR7403508	fruit	infected with penicillium expansum	mature	0.378687
SRR7403502	fruit	infected with penicillium expansum	mature	0.931573
SRR7403503	fruit	infected with penicillium expansum	mature	0.891851
SRR7403505	fruit	infected with penicillium expansum	mature	0.587889
SRR1613973	Central seeds	no	20DAPF	2.83775
SRR1613974	Central seeds	no	20DAPF	3.45674
SRR1613975	Central seeds	no	20DAPF	2.80332
SRR1613976	Lateral seeds	no	20DAPF	3.34694
SRR1613977	Lateral seeds	no	20DAPF	2.69606
SRR1613978	Lateral seeds	no	20DAPF	3.12773
SRR3744786	stem	no	mature	3.44843
SRR3744787	stem	no	mature	3.77148
SRR3744772	stem	no	mature	3.48083
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.31025
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.42413
SRR1089478	leaf	Virus-free	plantlets	3.45704
SRR1089477	leaf	ASGV-infected	plantlets	4.15646
SRR767660	leaf	uninfected	fully developed	1.97371
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.22062
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.83238
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	2.75678
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.20209
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.53296
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.90101
SRR6308182	young leaf	no	immature leaves	5.64133
SRR3744769	leaf	no	mature	2.82322
SRR3744770	leaf	no	mature	2.88194
SRR3744771	leaf	no	mature	3.27341
SRR5405145	leaf	no	mature	4.52738
SRR6320561	leaf	no	mature	3.58031