Gene detail

Detail information of MD00G1089400 Annotation

Gene ID	Annotation
MD00G1089400	silencing defective 5

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0154

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD00G1089400	mRNA	Chr00	18475463	18486672	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G15390.1	1	SDE5\|silencing defective 5
Prunus persica	Prupe.4G184000.2.p	1	silencing defective 5
Prunus persica	Prupe.4G184000.1.p	0.986	silencing defective 5
Prunus persica	Prupe.4G184000.5.p	0.732	silencing defective 5
Prunus persica	Prupe.4G184000.4.p	0.732	silencing defective 5
Prunus persica	Prupe.4G184000.8.p	0.718	silencing defective 5
Prunus persica	Prupe.4G184000.9.p	0.718	silencing defective 5
Prunus persica	Prupe.4G184000.6.p	0.718	silencing defective 5
Prunus persica	Prupe.4G184000.3.p	0.718	silencing defective 5
Prunus persica	Prupe.4G184000.7.p	0.718	silencing defective 5
Pyrus communis	PCP009222.1	1	-
Rosa multiflora	Rmu_sc0000062.1_g000019.1	1	-
Fragaria vesca	mrna31251.1	1	silencing defective 5
Populus trichocarpa	Potri.001G401900.1	1	silencing defective 5
Nicotiana benthamiana	Niben101Scf02463g01011.1	1	"Silencing defective 5, putative isoform 1 [Theobroma cacao] gb\|EOY12915.1\| Silencing defective 5, putative isoform 1 [Theobroma cacao]"

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08590.6	DUF1771	314	375	1.50E-11

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.508138
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.206468
SRR5252886	dormant buds	no	dormant buds(1 months)	0.226404
SRR5252887	dormant buds	no	dormant buds(1 months)	0.120311
SRR5252884	dormant buds	no	dormant buds(2 months)	0.0960686
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0.0524957
SRR5252880	dormant buds	no	dormant buds(4 months)	0.961596
SRR5252881	dormant buds	no	dormant buds(4 months)	0.640399
SRR5252878	bud break	no	bud break	1.53245
SRR5252879	bud break	no	bud break	2.81449
SRR3744766	flower	no	mature	0.361795
SRR3744767	flower	no	mature	0.404303
SRR3744768	flower	no	mature	0.264638
SRR6308190	stigmas	no	open flowers	0.536852
SRR6308181	styles	no	open flowers	0.989737
SRR6308188	filaments	no	open flowers	0.990281
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.511124
SRR6308192	pollen	no	open flowers	0.581026
SRR6308191	petals	no	open flowers	0.338695
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.785339
SRR6308189	ovaries	no	open flowers	0.744711
SRR3384922	fruit	no	1 week after full bloom	0.902003
SRR3384921	fruit	no	2 week after full bloom	1.31809
SRR3384920	fruit	no	3 week after full bloom	0.773733
SRR3384919	fruit	no	4 week after full bloom	0.833951
SRR3384923	fruit	no	5 week after full bloom	1.01967
SRR3384918	fruit	no	6 week after full bloom	0.966944
SRR3384917	fruit	no	8 week after full bloom	1.33532
SRR3384916	fruit	no	10 week after full bloom	2.64147
SRR3384915	fruit	no	12 week after full bloom	2.70553
SRR3384914	fruit	no	14 week after full bloom	3.61928
SRR3384913	fruit	no	16 week after full bloom	5.00891
SRR3384912	fruit	no	18 week after full bloom	3.05039
SRR3384911	fruit	no	19 week after full bloom	3.69308
SRR3384910	fruit	no	20 week after full bloom	1.95275
SRR768128	whole fruit	no	25 days post anthesis	0.923395
SRR768129	whole fruit	no	35 days post anthesis	0.536837
SRR768130	whole fruit	no	60 days post anthesis	2.00013
SRR768131	whole fruit	no	87 days post anthesis	4.89292
SRR7343308	immature fruit flesh	no	immature	0.266376
SRR7343309	immature fruit flesh	no	immature	0.797291
SRR6320494	ripe fruit flesh	no	mature	0.255209
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.325686
SRR7403506	fruit	uninfected	mature	0.317575
SRR7403507	fruit	uninfected	mature	0.188533
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.0692689
SRR7403502	fruit	infected with penicillium expansum	mature	0.0535549
SRR7403503	fruit	infected with penicillium expansum	mature	0.119633
SRR7403505	fruit	infected with penicillium expansum	mature	0.0537679
SRR1613973	Central seeds	no	20DAPF	6.46731
SRR1613974	Central seeds	no	20DAPF	6.24824
SRR1613975	Central seeds	no	20DAPF	6.71097
SRR1613976	Lateral seeds	no	20DAPF	7.11855
SRR1613977	Lateral seeds	no	20DAPF	6.18171
SRR1613978	Lateral seeds	no	20DAPF	6.03515
SRR3744786	stem	no	mature	0.330866
SRR3744787	stem	no	mature	0.572747
SRR3744772	stem	no	mature	0.367233
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.92341
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.79705
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0.134637
SRR767660	leaf	uninfected	fully developed	0.264131
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	6.11095
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.318778
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.114641
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.449012
SRR6308182	young leaf	no	immature leaves	0.714588
SRR3744769	leaf	no	mature	0.0211451
SRR3744770	leaf	no	mature	0.0666949
SRR3744771	leaf	no	mature	0.0875396
SRR5405145	leaf	no	mature	0.154406
SRR6320561	leaf	no	mature	0.341479