Gene detail

Detail information of MD00G1116100 Annotation

Gene ID	Annotation
MD00G1116100	Telomerase activating protein Est1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0508	plastid mitochondrial respiratory chain complex II laccase [EC:1.10.3.2] embryonic meristem initiation

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD00G1116100	mRNA	Chr00	24565342	24570292	-

Sequences

CDS:

MD00G1116100

GACAAATAATGGAAGACCCCCATTATTCTCTCACCTTTCTCTCTCCCCTTCCATTTGTGGGCATTTCTGCAGCATCAGTTAAGGACTCAAACTTGGCTGCTGAGTTTATTAACTCTATAGTTTGTTTATGCTCTTAGGAGGACTTGCTTTTTGCTCCCTGATGAGTTACGCCATAAGCATATTGTAGCTTGCACAAAGGAGATAAAGAACACTTGAAGAAGTTTTTCCCGTTAAACATGAAGGCGAATTCACCTTTGCCCCTCAAGGATCAGAGAGAAAGACAGAAGTTTTTGATTGAGGTTGCAATCAAAGAAAACCAGTTGTGGGGTATGGTCCATTCCAAAGGTCTTTTGAGCTCTGAGGTTCAGGACTTGTACCGCAAAGTGCGATCTAGTTATGAGAATCTCATACTGAGTGATTGTGAGCAGTTGGACCTTCAAGACATTGAGTATTCTTTGTGGAAGCTTCACTACAAGCATATTGATGAGTTTCGCAAAAGAATAAAGGGAAGTTCAGTGAATGCAGAAAGCAAAAATAAGGTGGTGCTACGAAATGATATTCATATAGAAGGGTTTAAAGTCTTTCTATCCGAAGCAATTGAATTTTACCAGAATGTGATTGTGAAATTAGGAAAATGTAAGAGGCTCCCAGAAGAGTCCGTGATAAATAGAAAGGAAGGCGACCTTACTTTTGCAGAACAGGAAAAGATGCAGAAGTGCCAGTTTTTGTGCCATCGCTTCTTGGTATGTCTCGGGGATCTGGCTAGGTACAGAGAACAGTATGAAAAGCCCAATGTGCAAACCCGAAATTGGTCAGTTGCGGCCACTCACTACTTGGAAGCGGCAGCAACTTGGTCAGATAGTGGAAACCCCCACAATCAGTTGGCTGTATTGGCAATATATATTGGTGACGAATTCCTTGCTTTGTACCATTGTATAAGAAGTTTAGCTGTTAAAGAACCTTTCCCTGACGCCCAAGATAACCTCATCCTACTGTTTGAAATGAGCAGGTCATCTCATGTATATTCTCTTTCAAGCGAGGTCCACTTTAATTTCTTAAACCCATCTGAAAGAAGCGGTGGTCAGACTATTTCACAGTCAAGCGATGATAATATGGTGAAAGCTGAGAATGTTTGCTTAATGGATACAAAGTTATGGTCTCTTATTATTGGAACGCTAAGTTTCTTTCACATTAAATCAAGTGTAGATGAATTCCCCTGTGCTTTTGCATCTACTATGAGAGAGTTGGATGCACTGATTGCACTAGATGACACAGAGCTAAAAGCCACATTGGAGTCATATCAACGTATGGATTCAGTTAGAAGAGGCCCATTTCGAGCACTCCAAGTTGTTTCTGTACTAATCTTTACTGTACAGAATATAATCAAGACCCTTGAAATAAAAGAATCAACAGACAAAATCAACATCCAGCAAAAAGAGCTGACACAGTTGGCACTGAATGCAGCATTTATTTTCATGGGGCGCTTTGTTGAAAGATGTTCAGAGGCTGGTACGGTAGAGCCTTGCCCCCTTCTGCCAGCTGTGCTTGTTTTTGTGGAGTGGCTAGTTGTCGTGCTGGGTGGAGCAGAAACGTATGGGGTCGATGAAAAAAGCAGAAGTGCGATGTCTTACTTTTTTGGTGCATTTGTTGATCTTCTGAAACAATTCAACCTCAGCGAGGATGAGGCCAAGTATCCAGAAGGTACTCCTTTGTGGGAAGACTATGAGCTGAGGGGATTTGCACCGGTAGCTTGTGTTCATGCATCACTAGATTTCTCGTATAGTCGGGAACATATAGACAATTATGACAGCGGAATTGATTGTCGTGCTCAGAGAATCATCAAGGCTGCAATGAAAATTGCAGACAGATCAACTGGTTCTCAAAAGTGGATTGTCTATGACAAATCTCAAAGAAAATTTTCCAAAGCCGATATGGCAGAGTCAAATGAATATGCTGACGGGAAAGAACTAGGAGGACTTGAGTCCAAGAACTCTGATGGTAAACTGAAAGTGCCTAGTCAGCATATCCACGAAGCGCTGAAAAAATGTGAGAAACAGATGATTGAGGAAAATCCAAGTTCAACCGGACAATCTGTTGACACGGAAGAGGAAGAAGTTATTCTCTTCAGGCCTCTTACAAGACATAATTCAGCACCACTCAAGATTTCCTCTCCTTTAAAGGATCCTAACTCTACGAAAGATATGGCATATCAAAGTGTACCTTCTGATGAGTGCTTGCGCCGTGCCACATCACTTCTTATAGCGCAAAACAAGGCGAAGACTGATCCTTTATCTTCTCATGCCGACATCTCTAATTTTTGGCGCAATATGCCATTTAATCAGCGGGAGCCTTCTGTGAAGGAACAGCCACCAATCACCGCGGGGCCTCCCTCTCTTAATGCTTGGGTCCTGGACGGAGGAAATTTGAACAGTAATAAGGAGAAAAGCACAAGCAGTATTAGTAAACGTGGCTCGAGCTTGAGCCCCATTGAGGAAGTAGCTTCAGAATCTTTGGATGTTCTGTCCATCAGTGAAAATGAATATTCTATCAGCGGTCATGAAATTTCGAGCACTCAATCCTCTTCCTCTACTTATACAACTCCTGTGCCTTCTGCTCCTTTATTGCCAGATGACGCTGTTTGGTTTAATGGTGGAACAGAATCTAGTTTCATCGACTGCAAAAACTCCGCAGGGATCAGCATGACCAGCAATCTCTGTGACACTGACGCGACACATTCACAGGCAGGCAGCTATGCAAACTGGACTGCAACTCAAGGGCTACCAGCTTATAGTTCCGGCATTCCAAATTTTGTGGATAAGCACCCGCCTTGGCATCAAATGACATCATCAGAATGGCTGCGTCAGTACAGAGAAAGTCTCAACCTTGGCCATAGTGCTTGGCCAAATTCTCTTTATCCGCCCAGGAACCTCGGAAACTTGTATGATTACGATGCTACCAGGTTAAATCATTTCAACCGATGGGGACATCACGTGGCTTCTAATCCGCCAATGTGTACAAACAACCCTCCACCATTGGTTCCTCCTTTTCCTCTAGATTATGGTGATGCAGATGGGCAAAGAAGGGAGAAGCTTCTTCCTGGCTATCAAAGAACAAGCCCCTACGGGTGTGGCGCTGTGAGGGATGTAAGAAACGAGCAGCGGCCGCTTCTGCAGTACCTTAAGGAGTTAGAAAGGAAACTGCAGCATGATCCCACTCTCAGAGGTCCTAGTTATTTGGACAATTGAGATATTTTTCACATGTAGAGTTGATAGTCGCAAAACATGCACGTCAATGTCTGCATTTTTTGTATATATGTAAGCAGATGGAAGTTGTGAAATCCTGCAGTCCTCAAATGTGATGAATTGTGAAAATGCATGTCTAATATGTTGTATCGCTAATTGGACTTGAGCAGATAGATCGATGCCTAAGCGAAGAGCCTGCGTACACGTACAAACCAAATCGTAGTGCCACTTACATGGTGTCGTATTTTCTAACCCGAGCATCATCATGCGTAAGAACCTGCATATGAAAGCGGAATGAAAGCGGAACAAC

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G28260.2	1	Telomerase activating protein Est1
Arabidopsis thaliana	AT1G28260.1	1	Telomerase activating protein Est1
Prunus persica	Prupe.4G049100.4.p	1	Telomerase activating protein Est1
Prunus persica	Prupe.4G049100.3.p	1	Telomerase activating protein Est1
Prunus persica	Prupe.4G049100.2.p	1	Telomerase activating protein Est1
Prunus persica	Prupe.4G049100.5.p	1	Telomerase activating protein Est1
Prunus persica	Prupe.4G049100.1.p	1	Telomerase activating protein Est1
Pyrus communis	PCP009851.1	1	-
Pyrus x bretschneideri	Pbr041306.1	1	-
Pyrus x bretschneideri	Pbr000377.1	1	-
Rubus occidentalis	Ro03_G06532	1	-
Fragaria vesca	mrna02375.1	1	Telomerase activating protein Est1
Populus trichocarpa	Potri.011G053800.1	1	Telomerase activating protein Est1
Populus trichocarpa	Potri.004G045300.1	0.659	Telomerase activating protein Est1
Nicotiana benthamiana	Niben101Scf01436g02008.1	1	Telomerase activating protein Est1 LENGTH=880
Nicotiana benthamiana	Niben101Scf06570g04001.1	0.87	Telomerase activating protein Est1 LENGTH=880

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10374.5	EST1	70	183	1.30E-16
PF10373.5	EST1_DNA_bind	195	507	9.20E-55

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.48595
SRR5252888	dormant buds	no	dormant buds(0 month)	21.0203
SRR5252889	dormant buds	no	dormant buds(0 month)	16.362
SRR5252886	dormant buds	no	dormant buds(1 months)	12.8035
SRR5252887	dormant buds	no	dormant buds(1 months)	11.668
SRR5252884	dormant buds	no	dormant buds(2 months)	10.7704
SRR5252882	dormant buds	no	dormant buds(3 months)	8.1255
SRR5252883	dormant buds	no	dormant buds(3 months)	11.953
SRR5252880	dormant buds	no	dormant buds(4 months)	13.4519
SRR5252881	dormant buds	no	dormant buds(4 months)	14.2957
SRR5252878	bud break	no	bud break	15.489
SRR5252879	bud break	no	bud break	9.50984
SRR3744766	flower	no	mature	13.9143
SRR3744767	flower	no	mature	14.5528
SRR3744768	flower	no	mature	14.3581
SRR6308190	stigmas	no	open flowers	2.07029
SRR6308181	styles	no	open flowers	1.35413
SRR6308188	filaments	no	open flowers	1.38478
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.71169
SRR6308192	pollen	no	open flowers	0.289938
SRR6308191	petals	no	open flowers	1.90596
SRR6308194	sepals	no	open flowers	2.46243
SRR6308193	receptacles	no	open flowers	1.73496
SRR6308189	ovaries	no	open flowers	2.12965
SRR3384922	fruit	no	1 week after full bloom	2.93057
SRR3384921	fruit	no	2 week after full bloom	2.39728
SRR3384920	fruit	no	3 week after full bloom	3.4328
SRR3384919	fruit	no	4 week after full bloom	4.45178
SRR3384923	fruit	no	5 week after full bloom	3.67162
SRR3384918	fruit	no	6 week after full bloom	3.3574
SRR3384917	fruit	no	8 week after full bloom	4.3354
SRR3384916	fruit	no	10 week after full bloom	3.38314
SRR3384915	fruit	no	12 week after full bloom	2.17498
SRR3384914	fruit	no	14 week after full bloom	2.37871
SRR3384913	fruit	no	16 week after full bloom	2.2731
SRR3384912	fruit	no	18 week after full bloom	1.83553
SRR3384911	fruit	no	19 week after full bloom	3.63993
SRR3384910	fruit	no	20 week after full bloom	3.16663
SRR768128	whole fruit	no	25 days post anthesis	3.64412
SRR768129	whole fruit	no	35 days post anthesis	3.9425
SRR768130	whole fruit	no	60 days post anthesis	3.32984
SRR768131	whole fruit	no	87 days post anthesis	4.48907
SRR7343308	immature fruit flesh	no	immature	13.5994
SRR7343309	immature fruit flesh	no	immature	11.1911
SRR6320494	ripe fruit flesh	no	mature	4.44794
SRR5405143	ripe fruit peel	no	mature	6.17012
SRR6320572	ripe fruit peel	no	mature	3.88459
SRR7403504	fruit	uninfected	mature	3.67086
SRR7403506	fruit	uninfected	mature	4.1932
SRR7403507	fruit	uninfected	mature	4.10471
SRR7403500	fruit	infected with penicillium expansum	mature	0.257288
SRR7403501	fruit	infected with penicillium expansum	mature	0.620442
SRR7403508	fruit	infected with penicillium expansum	mature	0.172027
SRR7403502	fruit	infected with penicillium expansum	mature	0.744813
SRR7403503	fruit	infected with penicillium expansum	mature	0.713054
SRR7403505	fruit	infected with penicillium expansum	mature	0.8546
SRR1613973	Central seeds	no	20DAPF	2.22593
SRR1613974	Central seeds	no	20DAPF	2.87429
SRR1613975	Central seeds	no	20DAPF	2.6328
SRR1613976	Lateral seeds	no	20DAPF	2.52597
SRR1613977	Lateral seeds	no	20DAPF	2.30135
SRR1613978	Lateral seeds	no	20DAPF	2.60002
SRR3744786	stem	no	mature	14.7613
SRR3744787	stem	no	mature	15.3281
SRR3744772	stem	no	mature	14.8873
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.68906
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.41509
SRR1089478	leaf	Virus-free	plantlets	8.16237
SRR1089477	leaf	ASGV-infected	plantlets	11.9929
SRR767660	leaf	uninfected	fully developed	4.47108
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	5.56272
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.98354
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.83069
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.48971
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	8.66061
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	8.94057
SRR6308182	young leaf	no	immature leaves	3.68531
SRR3744769	leaf	no	mature	14.3366
SRR3744770	leaf	no	mature	14.761
SRR3744771	leaf	no	mature	15.1022
SRR5405145	leaf	no	mature	10.4298
SRR6320561	leaf	no	mature	7.21316