| Gene ID | Annotation |
|---|---|
| MD00G1138200 | RING/U-box superfamily protein |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| Co-expression network | CFinderM0272 | E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27] werner syndrome ATP-dependent helicase [EC:3.6.4.12] protein phosphatase [EC:3.1.3.16] CPP Casein Kinase I Family 3'-5' DNA helicase activity positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD00G1138200 | mRNA | Chr00 | 29893035 | 29898544 | + |
| CDS: |
| MD00G1138200 |
| Protein: |
| MD00G1138200 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G34100.1 | 1 | CER9;SUD1|ECERIFERUM 9;SUPPRESSOR OF DRY2 DEFECTS 1 |
| Arabidopsis thaliana | AT4G34100.2 | 0.984 | CER9;SUD1|ECERIFERUM 9;SUPPRESSOR OF DRY2 DEFECTS 1 |
| Rosa multiflora | Rmu_sc0024605.1_g000001.1 | 1 | - |
| Fragaria vesca | mrna02137.1 | 1 | RING/U-box superfamily protein |
| Vitis vinifera | GSVIVT01031710001 | 1 | RING/U-box superfamily protein |
| Solanum lycopersicum | Solyc01g107880.2.1 | 1 | RING/U-box superfamily protein |
| Nicotiana benthamiana | Niben101Scf12919g00031.1 | 1 | E3 ubiquitin-protein ligase MARCH2 |
| Oryza sativa | LOC_Os06g43210.1 | 1 | "zinc finger, C3HC4 type domain containing protein, expressed" |
| Oryza sativa | LOC_Os08g01040.1 | 1 | "zinc finger, C3HC4 type domain containing protein, expressed" |
| Zea mays | GRMZM2G051792_P01 | 1 | - |
| GO term | Description | Category |
|---|---|---|
| GO:0008270 | zinc ion binding | molecular_function |
| KO | Description | Enzyme |
|---|---|---|
| K10661 | E3 ubiquitin-protein ligase MARCH6 | EC:2.3.2.27 |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12906.3 | RINGv | 49 | 95 | 4.80E-16 |
 |