Gene detail

Detail information of MD00G1150000 Annotation

Gene ID	Annotation
MD00G1150000	WW domain-containing protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0375	cobalt/nickel-transporting P-type ATPase D [EC:3.6.3.-] polyglutamine-binding protein 1 peptidylprolyl isomerase domain and WD repeat-containing protein 1 [EC:5.2.1.8] cullin 1 leucyl-tRNA synthetase [EC:6.1.1.4]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD00G1150000	mRNA	Chr00	33095651	33110450	+

Sequences

CDS:

MD00G1150000

CCTTCTCTTCCTGCTCAAATTTCCAAACAGTCGACAGACCGGTGGCACCTGCAGGCTGCAGCGAAGCCAAATCATGGGTTATTCCTGCTGAATTTTCCACAAAGCTCAATCAGTGCAGCTTTCAGCTCAGATTTGTGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCCTTCTCCCTCTCTCTGCATACAAACAGGTGTAGCAGCAGCAGCAGAGAGGGATTTTGGTGTGTCTGACTCCTCTGGCTATGGAGAGTTCCCATTCCCAAGATGACCGTGAGCCAGCCCCTCCGGGCGTCGACTCCTTTCCACAATATTCCAACTCAACCCATCACTTTACTTCCCACTGCCAGACTTTCACCCCACACCCACACCAACAGCCGCAGGGTGCGTTTTGGGCTCAAGATTCTACTGCAAACTCCGCGTTGGATATCGAAAACGCTAGCCAAATTGATGTGTCATTGCATCAACAAGAAATTTCTACTCAAAATGTCATACGTATTCAGAGAGAAGCAAGAGGCGTGAGTCTGTCTTCTAAGGATGGTTTAGACGTCTTCTCCCAACGCCTTGACCCTAATGCTCTAAAGGAGAATCTACTGAAGATGACCACGCAACATCGTGCTCAAATGGCTTCAAAACGTGGCAAGTCTTCCGTTCCTGGAGAAGGTAACATAGAAATTGGTAATGGCTATGGTGTACCAGGAGGAGGTGCTTATTATGGTGCTCCAGGACCTAATGTAACTGCACCTAGAAATCTGGGAGTTGGAAATAGTGAGATGGATCAGAAGAATATTGAATCTGATAAAGAGTTAAAACAGAAGCCTCCGGTTAAAGAATTGTCAGAGTATCTGAAGCAAAAGTTGAGGGATAGAGGTATTCTTAAAGATGATTCAAATAATGGCAATATTAAGTTGGAAAGGAGCTCAGCTCAACAAATGGAATGCAGGAAATTACCTTCTGGTTGGGTGGAGGCAACAGATCCTGCAAGTGGTGCTTTGTATTATTATAACGAGACCACAGGCAAGACTCAATGGGAAAAGCCTGCTCAGACATCTTCTGTTACACCACTTCAGTCGCCTTTATCTCTTGCAGAATATTGGGTGGAGGCTTTGGATGAAACAACAGGTCACAAGTATTACTACAATACAAAGACACAAGTATCGCAATGGAAACACCCTGGGTCATCAGAGCAGATTGCATCCCAACATTTTGAGAGTATGGTTTCTGGAAACCCTGCTAATGTTTATTGGGATGGCCAATCAACTGAGGTACAAGCAGGAAAGGATGAGTCGTCCACACTAAAGAAATGCCTGAGTTGCGGTGGATGGGGAGTAGGACTTGTTCAGATGTGGGGCTACTGCAATCATTGTACAAGAGTTCTTGATCTTCCACAAAGCCAGTACATGATGACTAGTTTGGGTAATTATCAGCAGACCCAAAATCCTGTAGATACAAAGGGAGATTCAGACAGAAAGGCTCCCACGCAGAGGTGTAATTGGAAACCTCCAATGGCAAAAGGAAATAGAAAGGATAGTAAGAAACGGGCTTACGATGAGGATGATGAATTGGATCCAATGGACCCCAGCGCATATTCAGATGCTCCTCGTGGTGGCTGGGTAGTAGGCCTCAAAGGAGTGCAGCCACGAGCAGCTGATACCACTGCCACAGGTCCCCTTTTTCAACAGCGGCCTTACCCATCACCAGGTGCTGTCTTGAGAAAAAATGCTGAAATTGCTTCGCAGACCAAGAAACCAAGCTCGCAATTTGCACCTATATCCAAAAGAGGGGACGGCAGTGATGGACTTGGCGATGCTGACTGAGAATTTGATCGAGTTTGGTCTGTTTTGTGTATCACAAGAGGCGTGCTGGGTGCGTATATCATGCATTCAGTTAGTTTCTGATCAAATTTAGATATACTTGTATCTACAGCAGCAGACGAACCATTGATTTAAGAGTTGTGTATTTAGCATCTGGCTGCTGCTATACAATGGGTTTCATAACTAAACTGTGACAAGACGTTAGAGTAATGAAACCCGGCGTTGATTGCAAGGCCGGATGTTTCTTTTTTCTTGCATTTACCATTCATGGTATGTAGGCTTTCCCAATTCATTTTCAAAGGGCTTCCTCTGATCTCAATTAGTATGAAAATGTGGAGTGCTGGTGCTAGATCCTTTTATGTCTTGAGGAGGTTGAGCACGTTTTTGTGTTGGATCCTTGTACCTCTAGCTGTAAATTAACTTATTAATAGTTGTTAGTTGACTTCGTATTTCTAGTTTCCATACTT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G41020.1	1	WW domain-containing protein
Prunus persica	Prupe.7G020500.3.p	1	WW domain-containing protein
Prunus persica	Prupe.7G020500.2.p	1	WW domain-containing protein
Prunus persica	Prupe.7G020500.4.p	1	WW domain-containing protein
Prunus persica	Prupe.7G020500.1.p	1	WW domain-containing protein
Pyrus communis	PCP036046.1	1	-
Pyrus x bretschneideri	Pbr021306.1	1	-
Pyrus x bretschneideri	Pbr025931.1	0.611	-
Rosa multiflora	Rmu_sc0000840.1_g000006.1	1	-
Rubus occidentalis	Ro01_G21568	1	-
Fragaria vesca	mrna23167.1	1	WW domain-containing protein
Vitis vinifera	GSVIVT01025818001	1	WW domain-containing protein
Populus trichocarpa	Potri.006G032200.1	1	WW domain-containing protein
Nicotiana benthamiana	Niben101Scf02597g06015.1	1	Polyglutamine-binding protein 1
Oryza sativa	LOC_Os01g68760.1	1	"WW domain containing protein, expressed"
Zea mays	GRMZM5G812921_P01	1	WW domain-containing protein

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K12865	polyglutamine-binding protein 1	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00397.22	WW	235	265	2.70E-14
PF00397.22	WW	283	310	1.90E-10

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.97423
SRR5252888	dormant buds	no	dormant buds(0 month)	9.32459
SRR5252889	dormant buds	no	dormant buds(0 month)	8.55161
SRR5252886	dormant buds	no	dormant buds(1 months)	11.1271
SRR5252887	dormant buds	no	dormant buds(1 months)	9.34633
SRR5252884	dormant buds	no	dormant buds(2 months)	12.0323
SRR5252882	dormant buds	no	dormant buds(3 months)	11.9913
SRR5252883	dormant buds	no	dormant buds(3 months)	12.1511
SRR5252880	dormant buds	no	dormant buds(4 months)	10.9003
SRR5252881	dormant buds	no	dormant buds(4 months)	11.1259
SRR5252878	bud break	no	bud break	9.26261
SRR5252879	bud break	no	bud break	6.35638
SRR3744766	flower	no	mature	4.87349
SRR3744767	flower	no	mature	5.14667
SRR3744768	flower	no	mature	4.44691
SRR6308190	stigmas	no	open flowers	5.18388
SRR6308181	styles	no	open flowers	3.35985
SRR6308188	filaments	no	open flowers	4.56556
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.76522
SRR6308192	pollen	no	open flowers	2.30849
SRR6308191	petals	no	open flowers	3.09811
SRR6308194	sepals	no	open flowers	4.11179
SRR6308193	receptacles	no	open flowers	5.88218
SRR6308189	ovaries	no	open flowers	5.28986
SRR3384922	fruit	no	1 week after full bloom	4.1827
SRR3384921	fruit	no	2 week after full bloom	3.79228
SRR3384920	fruit	no	3 week after full bloom	4.08877
SRR3384919	fruit	no	4 week after full bloom	2.95898
SRR3384923	fruit	no	5 week after full bloom	3.20313
SRR3384918	fruit	no	6 week after full bloom	3.3658
SRR3384917	fruit	no	8 week after full bloom	3.75276
SRR3384916	fruit	no	10 week after full bloom	3.00009
SRR3384915	fruit	no	12 week after full bloom	3.32782
SRR3384914	fruit	no	14 week after full bloom	3.08407
SRR3384913	fruit	no	16 week after full bloom	3.67475
SRR3384912	fruit	no	18 week after full bloom	3.32965
SRR3384911	fruit	no	19 week after full bloom	3.38361
SRR3384910	fruit	no	20 week after full bloom	2.82788
SRR768128	whole fruit	no	25 days post anthesis	4.352
SRR768129	whole fruit	no	35 days post anthesis	3.02837
SRR768130	whole fruit	no	60 days post anthesis	2.77667
SRR768131	whole fruit	no	87 days post anthesis	4.0009
SRR7343308	immature fruit flesh	no	immature	5.48822
SRR7343309	immature fruit flesh	no	immature	3.15831
SRR6320494	ripe fruit flesh	no	mature	5.47076
SRR5405143	ripe fruit peel	no	mature	4.70434
SRR6320572	ripe fruit peel	no	mature	2.99883
SRR7403504	fruit	uninfected	mature	3.3977
SRR7403506	fruit	uninfected	mature	4.07193
SRR7403507	fruit	uninfected	mature	3.91264
SRR7403500	fruit	infected with penicillium expansum	mature	1.64333
SRR7403501	fruit	infected with penicillium expansum	mature	1.29554
SRR7403508	fruit	infected with penicillium expansum	mature	1.42839
SRR7403502	fruit	infected with penicillium expansum	mature	1.8689
SRR7403503	fruit	infected with penicillium expansum	mature	2.08741
SRR7403505	fruit	infected with penicillium expansum	mature	2.00426
SRR1613973	Central seeds	no	20DAPF	3.17616
SRR1613974	Central seeds	no	20DAPF	3.196
SRR1613975	Central seeds	no	20DAPF	3.03236
SRR1613976	Lateral seeds	no	20DAPF	3.27359
SRR1613977	Lateral seeds	no	20DAPF	2.82459
SRR1613978	Lateral seeds	no	20DAPF	2.98221
SRR3744786	stem	no	mature	6.20597
SRR3744787	stem	no	mature	5.68529
SRR3744772	stem	no	mature	5.94434
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.1074
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.87885
SRR1089478	leaf	Virus-free	plantlets	5.37293
SRR1089477	leaf	ASGV-infected	plantlets	4.64862
SRR767660	leaf	uninfected	fully developed	3.5647
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	1.76818
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.7655
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.902823
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.37061
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.10253
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.02973
SRR6308182	young leaf	no	immature leaves	6.47153
SRR3744769	leaf	no	mature	5.71491
SRR3744770	leaf	no	mature	5.93006
SRR3744771	leaf	no	mature	6.69758
SRR5405145	leaf	no	mature	6.12296
SRR6320561	leaf	no	mature	4.07011