Gene detail

Detail information of MD00G1159900 Annotation

Gene ID	Annotation
MD00G1159900	DNA/RNA helicase protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD00G1159900	mRNA	Chr00	35388460	35392457	+

Sequences

CDS:

MD00G1159900

GCACCGATTCCTCGCTCCCTCTCTCTCTCTCTCTCTCTCTCCTGAACTGAAAATAAATTATAAAACGTAGAGAAGCTGAAAACTCCAGTGAGTTTAAACCCTAAACCGCCATTCATCATCCAAATTGTAGAAGGTAATCACATCAAAGCGATGGAGGAAGAAGATCCCGTAACATTCTTCATGTCCCTCGATCACTGGCAAGGCTCTCCGCCCTCCTCCGATGACTGTCCCGCACTTTCTTCCCAAGACCAAGGCTCGCAGTCTCTCTCTTCTTCCTCGGAAACCTTCATGCTCGGCTTCGTCATAGCCAACATCGTCGGAATTCAATACTACTCAGGCACCATCAGTGGCCGAGAAATGGTGGGTCTTGTCCGAGAACCCCTCAATCCCTACGATTCCAACGCCATCAAAGTCCTTAATACCCGAACGCTTCAGGTGGGTCACATCGAACGCTCCGTCGCCGCCGTCCTTGCCCCCTTGATCGACTCGAATTTGATTTCCGTCGAAGGCATTGTGCCCAATACGCGCTCTAAGGCCAACAGGTTCAAGATTCCTTGCCAAGTTCACATCTTTGCAAGGTTTGAAGCCTTTCCCTCTGCGAAATCTGCAATTATGCGATCTGGGTTGCAGCTGATTTGTGATGCTGATGCGTCTTTCACTCTATCCGAGGCACTGGTTGTCAAGGAGAAGAAGGATGAGAGGGGTTCCAAGAGTGTGGATGAGATTTTCAAGCTGGTGGAGGAGAGTGCGAACAAAAAGGGTGCTTTACAAGCATTGGAACCTCCGAAACAAGTGATCAAATCAGAGCTGTTTGTTCACCAGAAAGAAGGCTTGGGATGGTTGGTGCATAGAGAGAATTCTGGTGAATTGCCTCCCTTTTGGGAAGAGAAAGATGGCTCTTTTGTGAATGTCTTGACCAATTACCACACTGATAAGCGACCGGAGCCTCTAAGAGGTGGGATTTTGGCAGACGATATGGGGTTGGGTAAGACTTTAACTTTGCTTTCTTTGATTGCGTTTGATAAATATGGTAGTGTAGATGTAAGCGTACTAGATGATAACAAAATGGGTGATGATTCTTTGTCTGTTTCATATAGTAAGAAGGGTAAGAGGGGTGCCCCAAGTAAAAAAGGCACTGGGTCACGAAAAAAATCCAAAACTGAGGATACCAATGCCAGCAGCAACGTGGAAGGAAAATGTGTGAGTGTAGATGATAAGTCTTTGGGGTATTGTAGTACCAAGACAACGTTAATAGTGTGCCCACCTTCTGTATTTTCGACCTGGGTAACACAACTAGGAGAACACACTAGGCCGGGTAGATTGAAGGTGTATATGTACTATGGAGAGCGGACTAGCAATGCTGAGGAGCTTAAGGAGTATGATATAGTGTTGACTACATATAGTATTTTGTCTACTGAAAATTCTTGGACAGAATCCCCTGTTAAAGAGATTGAGTGGTGGAGGGTGATTTTGGATGAGGCACACATGATTAAGAATGTTAATGCTCAACAAAGTCAAGCTGTTACTAGTTTGAAGGCTAAGCGAAGGTGGACTGTTACTGGAACACCCATCCATAATGGCTCATTTGATTTGTTTTCTTTGATGGCATTCCTGAGATTTGAGCCTTTTTCAATTAAGAGCTACTGGCAAAGCTTGGTGCAGCGCCCACTTGCTCATGGCAACCAAAAGGGGCTCTTACGGCTGCAGGTTCTAATGGAAACCATTTCTTTGCGAAGAACAAAAGACAAGGGGCTGATTGGATTACCTCCTAAAACCTTAGAGACTTGTTATGTGGAACTCTCTGGTGAAGAACGTGAACTGTATGATCAGATGGAAGGAGAAGCAAAGAGTGTCGTGAGGAGTTACATTGATGCTGAATGTTTAATGCGCAACTATTCCACTGTACTTAGCATCATCTTACGACTTCGGCAGATCTGCACTGATGTGGCATTGTGCCCTTCTGATCTCAAATCACTTCTCCATTCGAACAATATTGAAGGTATTTGAAAGGATGTTATATTTGTTTAGTGCAACTTCACTCACGTGCGTACCATCTTGGTTCATTGGAACCCTTTCACTGCTATATTTATTTACTGTTCTCTAAGTCATAATTTTTCTTTTCATCAGTAAACCTTATTTAAGTTTGTCAGAATTCTGTTCTACTTATTTACATTCTTGGATTCACATTCTGTTCAGTACTTGTATACTCGCTTCCCCAAACTGGTAGGCATGTATTCTTTTGGGATGTTTTTCATTATTCTTAATAT

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	SNF2
Epigenetic Regulators	CHR

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP031625.1	1	-
Vitis vinifera	GSVIVT01025773001	1	DNA/RNA helicase protein

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function
GO:0003677	DNA binding	molecular_function
GO:0005524	ATP binding	molecular_function

KEGG

KO	Description	Enzyme
K15711	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3	EC:3.6.4.- 2.3.2.27

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08797.7	HIRAN	49	137	1.30E-17

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.7815
SRR5252888	dormant buds	no	dormant buds(0 month)	7.54736
SRR5252889	dormant buds	no	dormant buds(0 month)	6.53659
SRR5252886	dormant buds	no	dormant buds(1 months)	7.03078
SRR5252887	dormant buds	no	dormant buds(1 months)	5.87112
SRR5252884	dormant buds	no	dormant buds(2 months)	7.28398
SRR5252882	dormant buds	no	dormant buds(3 months)	9.01522
SRR5252883	dormant buds	no	dormant buds(3 months)	4.99649
SRR5252880	dormant buds	no	dormant buds(4 months)	7.83381
SRR5252881	dormant buds	no	dormant buds(4 months)	6.75816
SRR5252878	bud break	no	bud break	7.87996
SRR5252879	bud break	no	bud break	6.55352
SRR3744766	flower	no	mature	1.53491
SRR3744767	flower	no	mature	1.86383
SRR3744768	flower	no	mature	1.76829
SRR6308190	stigmas	no	open flowers	1.36495
SRR6308181	styles	no	open flowers	1.60215
SRR6308188	filaments	no	open flowers	2.56263
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.910096
SRR6308192	pollen	no	open flowers	0.469719
SRR6308191	petals	no	open flowers	1.98695
SRR6308194	sepals	no	open flowers	1.79269
SRR6308193	receptacles	no	open flowers	1.74753
SRR6308189	ovaries	no	open flowers	1.85118
SRR3384922	fruit	no	1 week after full bloom	1.27318
SRR3384921	fruit	no	2 week after full bloom	0.669382
SRR3384920	fruit	no	3 week after full bloom	0.381378
SRR3384919	fruit	no	4 week after full bloom	0.51249
SRR3384923	fruit	no	5 week after full bloom	0.456913
SRR3384918	fruit	no	6 week after full bloom	0.508638
SRR3384917	fruit	no	8 week after full bloom	0.538518
SRR3384916	fruit	no	10 week after full bloom	0.476986
SRR3384915	fruit	no	12 week after full bloom	0.26337
SRR3384914	fruit	no	14 week after full bloom	0.328412
SRR3384913	fruit	no	16 week after full bloom	0.902567
SRR3384912	fruit	no	18 week after full bloom	0.645343
SRR3384911	fruit	no	19 week after full bloom	0.69633
SRR3384910	fruit	no	20 week after full bloom	1.09041
SRR768128	whole fruit	no	25 days post anthesis	2.0606
SRR768129	whole fruit	no	35 days post anthesis	0.577748
SRR768130	whole fruit	no	60 days post anthesis	0.565045
SRR768131	whole fruit	no	87 days post anthesis	1.57974
SRR7343308	immature fruit flesh	no	immature	1.93313
SRR7343309	immature fruit flesh	no	immature	0.857019
SRR6320494	ripe fruit flesh	no	mature	2.26768
SRR5405143	ripe fruit peel	no	mature	1.19682
SRR6320572	ripe fruit peel	no	mature	1.25615
SRR7403504	fruit	uninfected	mature	1.33435
SRR7403506	fruit	uninfected	mature	1.30276
SRR7403507	fruit	uninfected	mature	1.47073
SRR7403500	fruit	infected with penicillium expansum	mature	0.679287
SRR7403501	fruit	infected with penicillium expansum	mature	0.930504
SRR7403508	fruit	infected with penicillium expansum	mature	0.670793
SRR7403502	fruit	infected with penicillium expansum	mature	0.821149
SRR7403503	fruit	infected with penicillium expansum	mature	0.386172
SRR7403505	fruit	infected with penicillium expansum	mature	0.737634
SRR1613973	Central seeds	no	20DAPF	1.57771
SRR1613974	Central seeds	no	20DAPF	1.81651
SRR1613975	Central seeds	no	20DAPF	1.51219
SRR1613976	Lateral seeds	no	20DAPF	1.40915
SRR1613977	Lateral seeds	no	20DAPF	1.32545
SRR1613978	Lateral seeds	no	20DAPF	1.67832
SRR3744786	stem	no	mature	1.66221
SRR3744787	stem	no	mature	1.43019
SRR3744772	stem	no	mature	1.55763
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.03406
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.93252
SRR1089478	leaf	Virus-free	plantlets	2.31283
SRR1089477	leaf	ASGV-infected	plantlets	2.28332
SRR767660	leaf	uninfected	fully developed	1.49341
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.876777
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.4634
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.83338
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.72261
SRR6308182	young leaf	no	immature leaves	1.60139
SRR3744769	leaf	no	mature	1.32653
SRR3744770	leaf	no	mature	1.6429
SRR3744771	leaf	no	mature	1.30021
SRR5405145	leaf	no	mature	2.24285
SRR6320561	leaf	no	mature	1.65633