Gene detail

Detail information of MD01G1051400 Annotation

Gene ID	Annotation
MD01G1051400	arginine/serine-rich splicing factor 35

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0403	spliceosomal complex nuclear speck

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1051400	mRNA	Chr01	15532563	15537396	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus x bretschneideri	Pbr036137.1	1	-
Rubus occidentalis	Ro07_G21672	1	-
Fragaria vesca	mrna18891.1	1	arginine/serine-rich splicing factor 35
Vitis vinifera	GSVIVT01027520001	1	arginine/serine-rich splicing factor 35
Nicotiana benthamiana	Niben101Scf28259g00007.1	1	arginine/serine-rich splicing factor 35 LENGTH=350
Oryza sativa	LOC_Os04g02870.4	1	"RNA recognition motif containing protein, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0000166	nucleotide binding	molecular_function
GO:0003676	nucleic acid binding	molecular_function

KEGG

KO	Description	Enzyme
K12893	"splicing factor, arginine/serine-rich 4/5/6"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.18	RRM_1	4	62	6.30E-15
PF00076.18	RRM_1	96	158	3.00E-14

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	15.4201
SRR5252888	dormant buds	no	dormant buds(0 month)	32.7715
SRR5252889	dormant buds	no	dormant buds(0 month)	35.713
SRR5252886	dormant buds	no	dormant buds(1 months)	26.152
SRR5252887	dormant buds	no	dormant buds(1 months)	33.4668
SRR5252884	dormant buds	no	dormant buds(2 months)	34.7628
SRR5252882	dormant buds	no	dormant buds(3 months)	32.3668
SRR5252883	dormant buds	no	dormant buds(3 months)	40.7141
SRR5252880	dormant buds	no	dormant buds(4 months)	37.7426
SRR5252881	dormant buds	no	dormant buds(4 months)	35.5397
SRR5252878	bud break	no	bud break	26.8681
SRR5252879	bud break	no	bud break	21.3439
SRR3744766	flower	no	mature	25.6204
SRR3744767	flower	no	mature	25.4168
SRR3744768	flower	no	mature	27.4128
SRR6308190	stigmas	no	open flowers	13.9735
SRR6308181	styles	no	open flowers	15.6602
SRR6308188	filaments	no	open flowers	10.9459
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	6.72631
SRR6308192	pollen	no	open flowers	8.20098
SRR6308191	petals	no	open flowers	11.8418
SRR6308194	sepals	no	open flowers	14.5629
SRR6308193	receptacles	no	open flowers	16.9979
SRR6308189	ovaries	no	open flowers	14.001
SRR3384922	fruit	no	1 week after full bloom	21.3704
SRR3384921	fruit	no	2 week after full bloom	19.0466
SRR3384920	fruit	no	3 week after full bloom	12.6668
SRR3384919	fruit	no	4 week after full bloom	16.9449
SRR3384923	fruit	no	5 week after full bloom	10.9507
SRR3384918	fruit	no	6 week after full bloom	16.6998
SRR3384917	fruit	no	8 week after full bloom	17.3136
SRR3384916	fruit	no	10 week after full bloom	16.683
SRR3384915	fruit	no	12 week after full bloom	14.7356
SRR3384914	fruit	no	14 week after full bloom	14.1848
SRR3384913	fruit	no	16 week after full bloom	11.4941
SRR3384912	fruit	no	18 week after full bloom	8.66468
SRR3384911	fruit	no	19 week after full bloom	9.72379
SRR3384910	fruit	no	20 week after full bloom	5.00186
SRR768128	whole fruit	no	25 days post anthesis	13.1803
SRR768129	whole fruit	no	35 days post anthesis	17.2141
SRR768130	whole fruit	no	60 days post anthesis	9.65965
SRR768131	whole fruit	no	87 days post anthesis	8.51227
SRR7343308	immature fruit flesh	no	immature	10.6781
SRR7343309	immature fruit flesh	no	immature	9.40199
SRR6320494	ripe fruit flesh	no	mature	10.5142
SRR5405143	ripe fruit peel	no	mature	13.8507
SRR6320572	ripe fruit peel	no	mature	13.2841
SRR7403504	fruit	uninfected	mature	13.0756
SRR7403506	fruit	uninfected	mature	13.2824
SRR7403507	fruit	uninfected	mature	13.5494
SRR7403500	fruit	infected with penicillium expansum	mature	3.05142
SRR7403501	fruit	infected with penicillium expansum	mature	2.94335
SRR7403508	fruit	infected with penicillium expansum	mature	3.75403
SRR7403502	fruit	infected with penicillium expansum	mature	3.78575
SRR7403503	fruit	infected with penicillium expansum	mature	4.51027
SRR7403505	fruit	infected with penicillium expansum	mature	4.37092
SRR1613973	Central seeds	no	20DAPF	15.9429
SRR1613974	Central seeds	no	20DAPF	17.6994
SRR1613975	Central seeds	no	20DAPF	17.0605
SRR1613976	Lateral seeds	no	20DAPF	16.4824
SRR1613977	Lateral seeds	no	20DAPF	15.4866
SRR1613978	Lateral seeds	no	20DAPF	16.9624
SRR3744786	stem	no	mature	72.5019
SRR3744787	stem	no	mature	76.6649
SRR3744772	stem	no	mature	81.7481
SRX765691	seedling shoot apex	no	4-6 week old seedling	36.2515
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	23.6697
SRR1089478	leaf	Virus-free	plantlets	13.8962
SRR1089477	leaf	ASGV-infected	plantlets	12.9984
SRR767660	leaf	uninfected	fully developed	12.1261
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	9.13756
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	12.8158
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	14.7276
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	11.5964
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	9.0924
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	8.85391
SRR6308182	young leaf	no	immature leaves	36.8837
SRR3744769	leaf	no	mature	52.0785
SRR3744770	leaf	no	mature	53.2683
SRR3744771	leaf	no	mature	57.358
SRR5405145	leaf	no	mature	22.9216
SRR6320561	leaf	no	mature	20.8865