Gene detail

Detail information of MD01G1053400 Annotation

Gene ID	Annotation
MD01G1053400	phosphomannomutase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1053400	mRNA	Chr01	15828816	15832541	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G45790.1	1	ATPMM;PMM\|PHOSPHOMANNOMUTASE
Prunus persica	Prupe.2G162400.1.p	1	phosphomannomutase
Pyrus communis	PCP039973.1	1	-
Rosa multiflora	Rmu_sc0005947.1_g000024.1	1	-
Rubus occidentalis	Ro07_G24057	1	-
Fragaria vesca	mrna19090.1	1	phosphomannomutase
Vitis vinifera	GSVIVT01026838001	1	phosphomannomutase
Solanum lycopersicum	Solyc08g008670.2.1	0.923	phosphomannomutase
Solanum lycopersicum	Solyc05g048760.2.1	1	phosphomannomutase
Populus trichocarpa	Potri.014G080500.1	1	phosphomannomutase
Nicotiana benthamiana	Niben101Scf07459g00017.1	1	Phosphomannomutase
Oryza sativa	LOC_Os04g58580.1	1	"phosphomannomutase, putative, expressed"
Zea mays	GRMZM2G165535_P01	1	phosphomannomutase

Gene Ontology

GO term	Description	Category
GO:0005737	cytoplasm	cellular component
GO:0004615	phosphomannomutase activity	molecular_function
GO:0019307	mannose biosynthetic process	biological_process

KEGG

KO	Description	Enzyme
K17497	phosphomannomutase	EC:5.4.2.8

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	87.8609
SRR5252888	dormant buds	no	dormant buds(0 month)	25.3936
SRR5252889	dormant buds	no	dormant buds(0 month)	21.7066
SRR5252886	dormant buds	no	dormant buds(1 months)	27.7543
SRR5252887	dormant buds	no	dormant buds(1 months)	35.6508
SRR5252884	dormant buds	no	dormant buds(2 months)	17.1583
SRR5252882	dormant buds	no	dormant buds(3 months)	25.031
SRR5252883	dormant buds	no	dormant buds(3 months)	30.5145
SRR5252880	dormant buds	no	dormant buds(4 months)	23.576
SRR5252881	dormant buds	no	dormant buds(4 months)	22.7023
SRR5252878	bud break	no	bud break	32.5021
SRR5252879	bud break	no	bud break	39.404
SRR3744766	flower	no	mature	32.8034
SRR3744767	flower	no	mature	33.5013
SRR3744768	flower	no	mature	34.6969
SRR6308190	stigmas	no	open flowers	41.4475
SRR6308181	styles	no	open flowers	47.7879
SRR6308188	filaments	no	open flowers	83.2415
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	54.1792
SRR6308192	pollen	no	open flowers	33.7165
SRR6308191	petals	no	open flowers	68.8607
SRR6308194	sepals	no	open flowers	110.937
SRR6308193	receptacles	no	open flowers	52.1732
SRR6308189	ovaries	no	open flowers	59.8963
SRR3384922	fruit	no	1 week after full bloom	52.0708
SRR3384921	fruit	no	2 week after full bloom	56.2049
SRR3384920	fruit	no	3 week after full bloom	44.9523
SRR3384919	fruit	no	4 week after full bloom	56.4256
SRR3384923	fruit	no	5 week after full bloom	61.1421
SRR3384918	fruit	no	6 week after full bloom	43.8284
SRR3384917	fruit	no	8 week after full bloom	34.891
SRR3384916	fruit	no	10 week after full bloom	42.1253
SRR3384915	fruit	no	12 week after full bloom	44.6914
SRR3384914	fruit	no	14 week after full bloom	40.4791
SRR3384913	fruit	no	16 week after full bloom	35.7366
SRR3384912	fruit	no	18 week after full bloom	29.6392
SRR3384911	fruit	no	19 week after full bloom	29.9851
SRR3384910	fruit	no	20 week after full bloom	27.6852
SRR768128	whole fruit	no	25 days post anthesis	39.5115
SRR768129	whole fruit	no	35 days post anthesis	56.4353
SRR768130	whole fruit	no	60 days post anthesis	31.9178
SRR768131	whole fruit	no	87 days post anthesis	22.0735
SRR7343308	immature fruit flesh	no	immature	27.2757
SRR7343309	immature fruit flesh	no	immature	41.0624
SRR6320494	ripe fruit flesh	no	mature	18.1473
SRR5405143	ripe fruit peel	no	mature	17.9255
SRR6320572	ripe fruit peel	no	mature	7.47517
SRR7403504	fruit	uninfected	mature	23.8406
SRR7403506	fruit	uninfected	mature	23.0818
SRR7403507	fruit	uninfected	mature	23.4834
SRR7403500	fruit	infected with penicillium expansum	mature	55.109
SRR7403501	fruit	infected with penicillium expansum	mature	61.0628
SRR7403508	fruit	infected with penicillium expansum	mature	52.5541
SRR7403502	fruit	infected with penicillium expansum	mature	49.5745
SRR7403503	fruit	infected with penicillium expansum	mature	50.1343
SRR7403505	fruit	infected with penicillium expansum	mature	47.2438
SRR1613973	Central seeds	no	20DAPF	70.239
SRR1613974	Central seeds	no	20DAPF	72.4362
SRR1613975	Central seeds	no	20DAPF	69.2957
SRR1613976	Lateral seeds	no	20DAPF	62.4452
SRR1613977	Lateral seeds	no	20DAPF	64.9544
SRR1613978	Lateral seeds	no	20DAPF	68.3507
SRR3744786	stem	no	mature	23.1586
SRR3744787	stem	no	mature	23.6952
SRR3744772	stem	no	mature	21.9566
SRX765691	seedling shoot apex	no	4-6 week old seedling	36.7722
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	43.649
SRR1089478	leaf	Virus-free	plantlets	30.5997
SRR1089477	leaf	ASGV-infected	plantlets	29.2888
SRR767660	leaf	uninfected	fully developed	57.2117
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	37.4598
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	36.7157
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	33.0972
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	27.3484
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	34.7655
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	27.7672
SRR6308182	young leaf	no	immature leaves	53.4335
SRR3744769	leaf	no	mature	26.1638
SRR3744770	leaf	no	mature	29.0153
SRR3744771	leaf	no	mature	26.8413
SRR5405145	leaf	no	mature	43.8077
SRR6320561	leaf	no	mature	43.3047