Gene detail

Detail information of MD01G1067400 Annotation

Gene ID	Annotation
MD01G1067400	Putative membrane lipoprotein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0112	histone-lysine N-methyltransferase SETD1 [EC:2.1.1.43] vacuolar protein sorting-associated protein 41 AP endonuclease 2 [EC:4.2.99.18] cysteine-type endopeptidase inhibitor activity zinc ion binding histone methyltransferase activity (H3-K4 specific) serine-type endopeptidase inhibitor activity nuclease activity SDG

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1067400	mRNA	Chr01	17066078	17067528	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G00310.2	1	EDA8;MEE46\|EMBRYO SAC DEVELOPMENT ARREST 8;MATERNAL EFFECT EMBRYO ARREST 46
Arabidopsis thaliana	AT4G00310.1	1	EDA8;MEE46\|EMBRYO SAC DEVELOPMENT ARREST 8;MATERNAL EFFECT EMBRYO ARREST 46
Prunus persica	Prupe.2G173800.1.p	1	Putative membrane lipoprotein
Pyrus communis	PCP018414.1	1	-
Pyrus x bretschneideri	Pbr009120.1	1	-
Rosa multiflora	Rmu_sc0000166.1_g000038.1	1	-
Rubus occidentalis	Ro07_G04357	1	-
Fragaria vesca	mrna19245.1	1	Putative membrane lipoprotein
Vitis vinifera	GSVIVT01026998001	1	Putative membrane lipoprotein
Solanum lycopersicum	Solyc02g070700.1.1	1	Putative membrane lipoprotein
Populus trichocarpa	Potri.014G087500.1	1	Putative membrane lipoprotein
Populus trichocarpa	Potri.002G161700.1	0.704	Putative membrane lipoprotein
Nicotiana benthamiana	Niben101Scf07728g01008.1	1	Growth-regulating factor 9
Nicotiana benthamiana	Niben101Scf03455g07003.1	0.752	Growth-regulating factor 9
Oryza sativa	LOC_Os02g28580.1	1	expressed protein
Oryza sativa	LOC_Os10g30890.1	1	expressed protein
Zea mays	GRMZM2G001606_P01	1	-
Zea mays	GRMZM2G001592_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08879.6	WRC	116	149	7.10E-11

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.633147
SRR5252888	dormant buds	no	dormant buds(0 month)	1.27427
SRR5252889	dormant buds	no	dormant buds(0 month)	0.615072
SRR5252886	dormant buds	no	dormant buds(1 months)	0.539569
SRR5252887	dormant buds	no	dormant buds(1 months)	0.430092
SRR5252884	dormant buds	no	dormant buds(2 months)	2.06057
SRR5252882	dormant buds	no	dormant buds(3 months)	1.60739
SRR5252883	dormant buds	no	dormant buds(3 months)	0.375326
SRR5252880	dormant buds	no	dormant buds(4 months)	1.60418
SRR5252881	dormant buds	no	dormant buds(4 months)	1.52621
SRR5252878	bud break	no	bud break	0.456519
SRR5252879	bud break	no	bud break	1.89836
SRR3744766	flower	no	mature	1.0313
SRR3744767	flower	no	mature	1.33857
SRR3744768	flower	no	mature	1.58093
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0.153478
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.66487
SRR6308192	pollen	no	open flowers	9.53867
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.152517
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.322528
SRR3384921	fruit	no	2 week after full bloom	0
SRR3384920	fruit	no	3 week after full bloom	0.102468
SRR3384919	fruit	no	4 week after full bloom	0.0946651
SRR3384923	fruit	no	5 week after full bloom	0.0900257
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0.144688
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0.119205
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0.0895185
SRR768128	whole fruit	no	25 days post anthesis	0
SRR768129	whole fruit	no	35 days post anthesis	0.28292
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0.178521
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.0595003
SRR7403506	fruit	uninfected	mature	0.0628533
SRR7403507	fruit	uninfected	mature	0.0746277
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.329027
SRR7403502	fruit	infected with penicillium expansum	mature	0.127193
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.44575
SRR1613974	Central seeds	no	20DAPF	0.284367
SRR1613975	Central seeds	no	20DAPF	0.475166
SRR1613976	Lateral seeds	no	20DAPF	0.0937149
SRR1613977	Lateral seeds	no	20DAPF	0.362481
SRR1613978	Lateral seeds	no	20DAPF	0.388449
SRR3744786	stem	no	mature	1.26348
SRR3744787	stem	no	mature	2.2528
SRR3744772	stem	no	mature	2.04706
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.72656
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.490713
SRR1089478	leaf	Virus-free	plantlets	0.41012
SRR1089477	leaf	ASGV-infected	plantlets	1.43157
SRR767660	leaf	uninfected	fully developed	0.623297
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.23276
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.88193
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.311667
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.795017
SRR6308182	young leaf	no	immature leaves	0.768052
SRR3744769	leaf	no	mature	2.00659
SRR3744770	leaf	no	mature	2.34834
SRR3744771	leaf	no	mature	2.75184
SRR5405145	leaf	no	mature	1.10028
SRR6320561	leaf	no	mature	0.801012