Gene detail

Detail information of MD01G1076100 Annotation

Gene ID	Annotation
MD01G1076100	gamma-tubulin

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1076100	mRNA	Chr01	18202324	18206643	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G61650.1	1	TUBG1\|gamma-tubulin
Arabidopsis thaliana	AT5G05620.1	0.6	ATGCP2;GCP2;TUBG2\|ARABIDOPSIS THALIANA GAMMA-TUBULIN COMPLEX PROTEIN 2;gamma-tubulin complex protein 2;GAMMA-TUBULIN 2
Prunus persica	Prupe.1G559600.3.p	1	gamma-tubulin
Prunus persica	Prupe.1G559600.2.p	1	gamma-tubulin
Pyrus communis	PCP008240.1	1	-
Pyrus x bretschneideri	Pbr021054.1	1	-
Rosa multiflora	Rmu_sc0031640.1_g000001.1	1	-
Fragaria vesca	mrna18918.1	1	gamma-tubulin
Vitis vinifera	GSVIVT01027050001	1	gamma-tubulin
Populus trichocarpa	Potri.014G094900.2	1	gamma-tubulin
Populus trichocarpa	Potri.002G167800.1	0.613	gamma-tubulin complex protein 2
Nicotiana benthamiana	Niben101Scf01826g02016.1	1	Tubulin beta-3 chain
Oryza sativa	LOC_Os05g06450.1	1	"tubulin/FtsZ domain containing protein, putative, expressed"
Zea mays	GRMZM2G085970_P01	1	protein_coding
Zea mays	GRMZM2G073888_P01	0.841	protein_coding

Gene Ontology

GO term	Description	Category
GO:0000930	gamma-tubulin complex	cellular component
GO:0005874	microtubule	cellular component
GO:0007020	microtubule nucleation	biological_process
GO:0005525	GTP binding	molecular_function
GO:0003924	GTPase activity	molecular_function
GO:0031122	cytoplasmic microtubule organization	biological_process
GO:0006184	obsolete GTP catabolic process	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00091.21	Tubulin	4	214	3.80E-69
PF03953.13	Tubulin_C	264	393	4.50E-45

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	12.7872
SRR5252888	dormant buds	no	dormant buds(0 month)	9.49763
SRR5252889	dormant buds	no	dormant buds(0 month)	9.92669
SRR5252886	dormant buds	no	dormant buds(1 months)	10.7243
SRR5252887	dormant buds	no	dormant buds(1 months)	7.06665
SRR5252884	dormant buds	no	dormant buds(2 months)	7.64498
SRR5252882	dormant buds	no	dormant buds(3 months)	9.12798
SRR5252883	dormant buds	no	dormant buds(3 months)	3.58073
SRR5252880	dormant buds	no	dormant buds(4 months)	14.3935
SRR5252881	dormant buds	no	dormant buds(4 months)	9.5048
SRR5252878	bud break	no	bud break	14.1548
SRR5252879	bud break	no	bud break	15.7968
SRR3744766	flower	no	mature	4.50866
SRR3744767	flower	no	mature	4.34153
SRR3744768	flower	no	mature	5.03942
SRR6308190	stigmas	no	open flowers	7.70771
SRR6308181	styles	no	open flowers	8.69692
SRR6308188	filaments	no	open flowers	11.2657
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.13254
SRR6308192	pollen	no	open flowers	1.65234
SRR6308191	petals	no	open flowers	6.26231
SRR6308194	sepals	no	open flowers	7.31373
SRR6308193	receptacles	no	open flowers	11.2317
SRR6308189	ovaries	no	open flowers	11.5507
SRR3384922	fruit	no	1 week after full bloom	10.3396
SRR3384921	fruit	no	2 week after full bloom	14.3831
SRR3384920	fruit	no	3 week after full bloom	12.1352
SRR3384919	fruit	no	4 week after full bloom	14.2961
SRR3384923	fruit	no	5 week after full bloom	12.5579
SRR3384918	fruit	no	6 week after full bloom	10.4747
SRR3384917	fruit	no	8 week after full bloom	12.0752
SRR3384916	fruit	no	10 week after full bloom	13.4457
SRR3384915	fruit	no	12 week after full bloom	13.9644
SRR3384914	fruit	no	14 week after full bloom	9.77189
SRR3384913	fruit	no	16 week after full bloom	9.23801
SRR3384912	fruit	no	18 week after full bloom	9.94849
SRR3384911	fruit	no	19 week after full bloom	9.40546
SRR3384910	fruit	no	20 week after full bloom	8.64494
SRR768128	whole fruit	no	25 days post anthesis	18.2196
SRR768129	whole fruit	no	35 days post anthesis	21.1947
SRR768130	whole fruit	no	60 days post anthesis	16.6777
SRR768131	whole fruit	no	87 days post anthesis	14.2653
SRR7343308	immature fruit flesh	no	immature	13.3736
SRR7343309	immature fruit flesh	no	immature	14.8526
SRR6320494	ripe fruit flesh	no	mature	7.98175
SRR5405143	ripe fruit peel	no	mature	7.73848
SRR6320572	ripe fruit peel	no	mature	4.2046
SRR7403504	fruit	uninfected	mature	7.95194
SRR7403506	fruit	uninfected	mature	7.2717
SRR7403507	fruit	uninfected	mature	7.1453
SRR7403500	fruit	infected with penicillium expansum	mature	2.76074
SRR7403501	fruit	infected with penicillium expansum	mature	2.09396
SRR7403508	fruit	infected with penicillium expansum	mature	2.75651
SRR7403502	fruit	infected with penicillium expansum	mature	2.58787
SRR7403503	fruit	infected with penicillium expansum	mature	3.00379
SRR7403505	fruit	infected with penicillium expansum	mature	3.46421
SRR1613973	Central seeds	no	20DAPF	13.3941
SRR1613974	Central seeds	no	20DAPF	12.7197
SRR1613975	Central seeds	no	20DAPF	11.0403
SRR1613976	Lateral seeds	no	20DAPF	12.0263
SRR1613977	Lateral seeds	no	20DAPF	11.84
SRR1613978	Lateral seeds	no	20DAPF	12.4735
SRR3744786	stem	no	mature	5.49976
SRR3744787	stem	no	mature	5.92392
SRR3744772	stem	no	mature	5.61882
SRX765691	seedling shoot apex	no	4-6 week old seedling	19.7575
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	20.0373
SRR1089478	leaf	Virus-free	plantlets	7.64869
SRR1089477	leaf	ASGV-infected	plantlets	8.48484
SRR767660	leaf	uninfected	fully developed	3.25418
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	20.2819
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	6.10518
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.17347
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	5.56217
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.08509
SRR6308182	young leaf	no	immature leaves	21.6824
SRR3744769	leaf	no	mature	4.22347
SRR3744770	leaf	no	mature	3.80779
SRR3744771	leaf	no	mature	4.24485
SRR5405145	leaf	no	mature	4.09632
SRR6320561	leaf	no	mature	7.87672