Gene detail

Detail information of MD01G1088900 Annotation

Gene ID	Annotation
MD01G1088900	pseudo-response regulator 5

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0379	geranylgeranyl transferase type-1 subunit beta [EC:2.5.1.59] CAAX-protein geranylgeranyltransferase complex mitochondrion Pseudo ARR-B CAAX-protein geranylgeranyltransferase activity protein geranylgeranylation chloroplast organization nuclear import

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1088900	mRNA	Chr01	20183520	20187776	+

Sequences

CDS:

MD01G1088900

TGTTCCACGTCGGCTTCGCACCCAGAAGCCAATGACGACCCTCCTTTTGATCCAGGCATCGAAAGATATTTTCGCGGCTGTGAGCGAACGCCTAAAATCCACCACCTTATTTCCCGAATTTCACGGGAAGGTTTTTCAGATGTTTTTTTACTGCCCTTCTTCTTCTTCGAGCTCAAAAAGTTGGTGAAGTTTGAATCTTTGATCTCTGCGACTCGGAATCGTTAAACCCTAGTTTTCTGTTGACTTTTGGATTCTTACTAGCTCTGATAAATTGGGTTTTGGATTTTTGGTGGAGTTTTGAAAAATGGGTGAAGTTGCTGTGAGTGGTGGTGAGGGTATGGAGACTGTGAAGCTGGATAAGAACGTGGAGGATGGCGGAGGAGGCAGTGGTGGTGGTGATTCTGGGGAGGTGGTGAGCTGGGAGAGCAACCTGCCAAAAATGGTGCTCCGGGTTCTGCTGGTTGAAGCCGATGATTCGACGCGGCAGATCATCGCTGCGCTTCTCCGAAAATGCAGTTACAAAGTTGTTGCAGTTGGGGATGGATTGAAGGCGTGGGAGGTCATAAAGAGGAAACATCATAAGATAAATCTTATATTAACAGAGACGGAGTTGCCGTCGATTTCCGGATTCGCGCTCCTTACGTTAGTCATGGAACACGACATGTGCAAGAACATACCTGTGATAATGATGTCCTCTGAGGATTCAACTAGCAGGGTCTTGAAATGCATGCTGAAAGGTGCAGCTGACTATCTCATTAAGCCTGTAAGGCGGAATGAGCTGCGTAACCTTTGGCAGCATGTTTGGAGAAGGCAAACTCATGGCGGTGCACCGGTTCCACAAAACGTTAATGTTACACAGAATAAAGTTGAAGCCACTTGCGAGAACAATATAGCAAGTAAACATTCAAATGGTTACGCAGCTTCTACGCAGGAAAATAAGGAATGCAGTGAGAAAGGAAGTGAAGCCCAAAGTTCTTGTACGACGCCTTACTTGGAAGCTGAGAGTGCGTACATGCAAAATATGCAGGATATTCCACAGCTAAAGTATGAGAGTGCTTCTAATTTAAGCAATACAGATATGAAAGGGCTCAAGGAATGTGCTAGACTGGACAACGAATCTGTTGTGCTTGAGAGTGAAGCAAAAGAGAAGTCAGGTACATTTGGATCATATGCTGTACCTTTGAAGGAAGGTCATACCTCAACTGGATTAAGACTCAGAGAGGACAATGTTCAAGGTGAAGGTATGCAACTGGAAAGTTACAAAGGAGATGCTAATATCACTTCTGAAACTCACATCAGCCATTATGGACTGGATGAACCCTCCGGTGGAGCTATTGACTTTATTGGAACCTTTGGGAATTGGCCAAAATGCACTGCCGGACCCCCTGACAATAGAGACGATGGTACAGAGCACATGGGATCCACTCCACAACTGGAACTTTCTTTGAGAAGTTCTCTGGATGGTTCAAACAAGCAAATGAACGATGAAAGGCCTGTGCTGAACCATTCTGATGCTTCTGCCTTTTCATGGTATAATAATAGCAAGACGTTGCAATCCTTTTTCCCAGCATTTCCCATCACTAAATCGGAGGTTGCAAGTAAATCCCATGATAGCCAGGAAAACAAGTCTACCTTGGTTTCCGGTCAAACTGAGGAAGCTGATTTATCGTTTCCAGGCTCTCAACTTGGGATGGTTCCTATCGCTGGGGCAATGTCTGATAATATTTGTGCTGCATACGGTCATTCTTTCCCATCCTTGTTTCATAGACAATCAGATTTAACCCCGACATGGAGTAGCAAATCGGCTTGCAATGGAGCACAATCCTCCTATCCTGTGAATTCCCCAAATCATTCCAATCCTGAAGTTTACCTCTCAGAAGAAGGTTGTCACCTGTCTGACAAGAGTACCTATAAATCTATTGGCCAGACCGTGCATGAGCAGAACAACCAGGAGCAAATGGAGGAACTGAGACCTGGTTCGCCTGCTACTGGGCAAAGTGGCTGTAGTAGTTTAGGCAATGCTGTTGGTAATGCTATTGGTCGCAGTGGACATGGAAGCAATTGTAGTAGCACTAATGGAAATGCCTCTCTGGCCGTGTCCGGTGAGATGGAGGCTTCTGAGAGTTTGAACGACAGTGGTCGTTCTGTTCATGAGGGATTTGGAGGAGCTGATCCTCTTCGTTCCAGCCAAAGGGAAGCAGCTCTGACCAAGTTCCGACTGAAGCGGAAAGATCGATGCTTTGAAAAAAAGGTCAGATACCAAAGCCGGAAAATACTAGCAGAGCAGCGGCCCCGGGTGAAAGGTCAGTTTGTGCACCGAGCACAAACTGATGCTCGAACTGCCAATGCTGTTGGTTTGTGACACCGAGTTTTGGCAACGTACCTGCGACTGCAAGTTAGTAGAAAGCGTGTAGAAAGCGTGTGTGGTTGTGTGATGCAGGAATCTTTAGATACTGTTGAAGCTGTTGTGAAGAAGCACAGAAAGATAAAGTGGTTGCAGAAGACATGGGTTTTGGTTTTGGTTTTGGATATTAGAGGTGGTAGTGGTGTATATAGGGATGCCACCTTAAAAGTGTCACCATCTGCTCTGCATAATATATGGTTTTTGTATGAACCTCGGAGAGTGATTTGTAGTTAAGAGGTTTAATGGTATGATATTTTGCATTAATGTGTTGGGTATATAATTTATGAAGGGCGAGTGTGTTCTTTTCTTAATTACAGAGGTTAAATTGTTGTCACATGTTATTTTGTATCTAAAAGGTTAATATTTTCTTTAATTTGAGGT

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	Pseudo ARR-B

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.2G198500.2.p	1	pseudo-response regulator 5
Prunus persica	Prupe.2G198500.1.p	1	pseudo-response regulator 5
Pyrus communis	PCP021730.1	1	-
Pyrus communis	PCP035968.1	1	-
Rosa multiflora	Rmu_sc0001816.1_g000014.1	1	-
Rubus occidentalis	Ro07_G07862	1	-
Fragaria vesca	mrna18611.1	1	pseudo-response regulator 5
Vitis vinifera	GSVIVT01027443001	1	pseudo-response regulator 5
Populus trichocarpa	Potri.014G106000.1	1	pseudo-response regulator 5
Zea mays	GRMZM2G179024_P01	1	-
Zea mays	GRMZM2G367834_P01	0.729	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function
GO:0000160	phosphorelay signal transduction system	biological_process
GO:0000156	phosphorelay response regulator activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.20	Response_reg	50	161	7.00E-19

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	15.7009
SRR5252888	dormant buds	no	dormant buds(0 month)	23.5037
SRR5252889	dormant buds	no	dormant buds(0 month)	24.9006
SRR5252886	dormant buds	no	dormant buds(1 months)	31.7889
SRR5252887	dormant buds	no	dormant buds(1 months)	35.0252
SRR5252884	dormant buds	no	dormant buds(2 months)	80.7472
SRR5252882	dormant buds	no	dormant buds(3 months)	58.3962
SRR5252883	dormant buds	no	dormant buds(3 months)	48.8233
SRR5252880	dormant buds	no	dormant buds(4 months)	50.7858
SRR5252881	dormant buds	no	dormant buds(4 months)	49.8394
SRR5252878	bud break	no	bud break	32.5713
SRR5252879	bud break	no	bud break	17.1355
SRR3744766	flower	no	mature	2.32844
SRR3744767	flower	no	mature	2.146
SRR3744768	flower	no	mature	2.4166
SRR6308190	stigmas	no	open flowers	1.19195
SRR6308181	styles	no	open flowers	2.09563
SRR6308188	filaments	no	open flowers	0.769018
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.59012
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	3.23656
SRR6308194	sepals	no	open flowers	3.40206
SRR6308193	receptacles	no	open flowers	2.03512
SRR6308189	ovaries	no	open flowers	1.965
SRR3384922	fruit	no	1 week after full bloom	10.4566
SRR3384921	fruit	no	2 week after full bloom	11.6015
SRR3384920	fruit	no	3 week after full bloom	15.4476
SRR3384919	fruit	no	4 week after full bloom	17.7752
SRR3384923	fruit	no	5 week after full bloom	8.48852
SRR3384918	fruit	no	6 week after full bloom	22.121
SRR3384917	fruit	no	8 week after full bloom	32.8361
SRR3384916	fruit	no	10 week after full bloom	27.5999
SRR3384915	fruit	no	12 week after full bloom	12.077
SRR3384914	fruit	no	14 week after full bloom	19.7256
SRR3384913	fruit	no	16 week after full bloom	20.2477
SRR3384912	fruit	no	18 week after full bloom	14.3638
SRR3384911	fruit	no	19 week after full bloom	23.0433
SRR3384910	fruit	no	20 week after full bloom	2.70876
SRR768128	whole fruit	no	25 days post anthesis	14.5719
SRR768129	whole fruit	no	35 days post anthesis	13.8865
SRR768130	whole fruit	no	60 days post anthesis	21.6697
SRR768131	whole fruit	no	87 days post anthesis	21.5537
SRR7343308	immature fruit flesh	no	immature	5.31547
SRR7343309	immature fruit flesh	no	immature	9.7475
SRR6320494	ripe fruit flesh	no	mature	12.8556
SRR5405143	ripe fruit peel	no	mature	13.5558
SRR6320572	ripe fruit peel	no	mature	11.066
SRR7403504	fruit	uninfected	mature	4.73201
SRR7403506	fruit	uninfected	mature	4.06036
SRR7403507	fruit	uninfected	mature	4.23356
SRR7403500	fruit	infected with penicillium expansum	mature	8.47343
SRR7403501	fruit	infected with penicillium expansum	mature	7.2473
SRR7403508	fruit	infected with penicillium expansum	mature	7.1893
SRR7403502	fruit	infected with penicillium expansum	mature	7.4572
SRR7403503	fruit	infected with penicillium expansum	mature	7.90492
SRR7403505	fruit	infected with penicillium expansum	mature	7.31354
SRR1613973	Central seeds	no	20DAPF	13.8457
SRR1613974	Central seeds	no	20DAPF	13.2646
SRR1613975	Central seeds	no	20DAPF	13.4011
SRR1613976	Lateral seeds	no	20DAPF	13.1193
SRR1613977	Lateral seeds	no	20DAPF	13.7529
SRR1613978	Lateral seeds	no	20DAPF	14.7715
SRR3744786	stem	no	mature	5.96864
SRR3744787	stem	no	mature	6.3469
SRR3744772	stem	no	mature	5.83442
SRX765691	seedling shoot apex	no	4-6 week old seedling	12.8161
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	22.2221
SRR1089478	leaf	Virus-free	plantlets	25.0411
SRR1089477	leaf	ASGV-infected	plantlets	27.1156
SRR767660	leaf	uninfected	fully developed	45.7087
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	40.876
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	47.8894
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	19.8261
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	9.28271
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	35.3682
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	29.5195
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	21.453
SRR6308182	young leaf	no	immature leaves	18.5569
SRR3744769	leaf	no	mature	3.07526
SRR3744770	leaf	no	mature	3.16877
SRR3744771	leaf	no	mature	3.39603
SRR5405145	leaf	no	mature	12.9395
SRR6320561	leaf	no	mature	10.6742