Gene detail

Detail information of MD01G1105600 Annotation

Gene ID	Annotation
MD01G1105600	Zim17-type zinc finger protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1105600	mRNA	Chr01	21898185	21900485	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G54826.1	1	ZR3\|zinc ribbon 3
Pyrus communis	PCP027611.1	1	-
Pyrus x bretschneideri	Pbr010687.2	1	-
Fragaria vesca	mrna23189.1	1	Zim17-type zinc finger protein
Solanum lycopersicum	Solyc05g053250.2.1	1	Zim17-type zinc finger protein
Nicotiana benthamiana	Niben101Scf06256g03009.1	1	DNL-type zinc finger protein
Nicotiana benthamiana	Niben101Scf00812g03002.1	0.609	DNL-type zinc finger protein
Oryza sativa	LOC_Os02g57430.1	1	"DNL zinc finger domain containing protein, putative, expressed"
Zea mays	GRMZM2G064608_P01	1	Zim17-type zinc finger protein

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function

KEGG

KO	Description	Enzyme
K17808	mitochondrial protein import protein ZIM17	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05180.8	zf-DNL	100	160	2.40E-24

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	15.2005
SRR5252888	dormant buds	no	dormant buds(0 month)	9.60974
SRR5252889	dormant buds	no	dormant buds(0 month)	13.7608
SRR5252886	dormant buds	no	dormant buds(1 months)	10.8509
SRR5252887	dormant buds	no	dormant buds(1 months)	9.73044
SRR5252884	dormant buds	no	dormant buds(2 months)	10.3597
SRR5252882	dormant buds	no	dormant buds(3 months)	6.9268
SRR5252883	dormant buds	no	dormant buds(3 months)	15.2531
SRR5252880	dormant buds	no	dormant buds(4 months)	11.2336
SRR5252881	dormant buds	no	dormant buds(4 months)	10.5506
SRR5252878	bud break	no	bud break	9.75453
SRR5252879	bud break	no	bud break	10.6576
SRR3744766	flower	no	mature	8.36457
SRR3744767	flower	no	mature	8.63816
SRR3744768	flower	no	mature	11.0355
SRR6308190	stigmas	no	open flowers	3.34453
SRR6308181	styles	no	open flowers	5.34461
SRR6308188	filaments	no	open flowers	4.04547
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.1416
SRR6308192	pollen	no	open flowers	5.10223
SRR6308191	petals	no	open flowers	7.36754
SRR6308194	sepals	no	open flowers	8.57302
SRR6308193	receptacles	no	open flowers	11.2004
SRR6308189	ovaries	no	open flowers	6.62216
SRR3384922	fruit	no	1 week after full bloom	12.298
SRR3384921	fruit	no	2 week after full bloom	10.2398
SRR3384920	fruit	no	3 week after full bloom	7.9859
SRR3384919	fruit	no	4 week after full bloom	6.90181
SRR3384923	fruit	no	5 week after full bloom	6.4504
SRR3384918	fruit	no	6 week after full bloom	6.8027
SRR3384917	fruit	no	8 week after full bloom	9.63947
SRR3384916	fruit	no	10 week after full bloom	5.198
SRR3384915	fruit	no	12 week after full bloom	7.68778
SRR3384914	fruit	no	14 week after full bloom	6.50709
SRR3384913	fruit	no	16 week after full bloom	5.26919
SRR3384912	fruit	no	18 week after full bloom	4.19564
SRR3384911	fruit	no	19 week after full bloom	5.03014
SRR3384910	fruit	no	20 week after full bloom	3.37582
SRR768128	whole fruit	no	25 days post anthesis	9.20889
SRR768129	whole fruit	no	35 days post anthesis	7.98373
SRR768130	whole fruit	no	60 days post anthesis	4.16437
SRR768131	whole fruit	no	87 days post anthesis	1.56728
SRR7343308	immature fruit flesh	no	immature	3.20204
SRR7343309	immature fruit flesh	no	immature	7.20316
SRR6320494	ripe fruit flesh	no	mature	6.02511
SRR5405143	ripe fruit peel	no	mature	3.15725
SRR6320572	ripe fruit peel	no	mature	2.56398
SRR7403504	fruit	uninfected	mature	4.10693
SRR7403506	fruit	uninfected	mature	3.39182
SRR7403507	fruit	uninfected	mature	4.40184
SRR7403500	fruit	infected with penicillium expansum	mature	9.45663
SRR7403501	fruit	infected with penicillium expansum	mature	10.8831
SRR7403508	fruit	infected with penicillium expansum	mature	9.70366
SRR7403502	fruit	infected with penicillium expansum	mature	5.10798
SRR7403503	fruit	infected with penicillium expansum	mature	7.66636
SRR7403505	fruit	infected with penicillium expansum	mature	7.37192
SRR1613973	Central seeds	no	20DAPF	13.9942
SRR1613974	Central seeds	no	20DAPF	14.9831
SRR1613975	Central seeds	no	20DAPF	15.7306
SRR1613976	Lateral seeds	no	20DAPF	15.0796
SRR1613977	Lateral seeds	no	20DAPF	17.271
SRR1613978	Lateral seeds	no	20DAPF	14.9401
SRR3744786	stem	no	mature	7.19571
SRR3744787	stem	no	mature	8.53339
SRR3744772	stem	no	mature	7.36716
SRX765691	seedling shoot apex	no	4-6 week old seedling	10.9677
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	12.7306
SRR1089478	leaf	Virus-free	plantlets	3.33797
SRR1089477	leaf	ASGV-infected	plantlets	1.99172
SRR767660	leaf	uninfected	fully developed	8.58029
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	11.2406
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.6022
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	6.72135
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	11.4083
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	5.04958
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	6.63405
SRR6308182	young leaf	no	immature leaves	15.6097
SRR3744769	leaf	no	mature	7.18022
SRR3744770	leaf	no	mature	6.75017
SRR3744771	leaf	no	mature	7.98912
SRR5405145	leaf	no	mature	5.52362
SRR6320561	leaf	no	mature	8.33186