Gene detail

Detail information of MD01G1121400 Annotation

Gene ID	Annotation
MD01G1121400	P-glycoprotein 20

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0365	plasma membrane endosome membrane G-protein coupled receptor activity GTPase activator activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1121400	mRNA	Chr01	23503348	23510954	+

Sequences

CDS:

MD01G1121400

GAAAGATTTATGCTTTCCATTTGCCGCATTATCCCTTTTATTTTTGAATTTTAATTTAATTTTGGGGGGTTTTTTGGCGGGTTTGGGAGTCAATACCTTCTTCCTTGTTTGTCTTTCTCCGCCTTGTTTGACCGAGTCGCCAACCCATCGACGATCCTTGAAGAATCGTCCCCTTCCTCCTTCGTCTTCTTCCTCCATCTCTTTCCCTTTCTGCTTTTCCGAAAAGCAGAAGCAGAATCGCGAAAGCAATCGAGAATCGCAGAGAAGCCAAAAGCGTCGAGATTTTTCCTCTAAATTTAGTGGATCTGTGCTAAATTTAGAGCGAGAGAAATAATAGGTGAAATTAGGTTTAGGGTTTTGGGGAGGGAGGAGAGAGGGTAGGAGGAGCGAGGGAGCCGTAATTTCGCCGGCTCCGCCAAGATGATGATAAATCGGGGACTGTTCGGGTGGTCCCCGCCGCACATACAGCCCTTGACGCCGGTCTCAGAGGTGTCGGAGCCGCCAGAGTCGCCTTCGCCGTATATGGAGCAGAGTAACGACGCGTCGGCTCAGCCGATGGAGCAGGAGGAGGAGATGGAGGAGCAGGAGGAGATGGAGCCGCCGCCAGCTGCCGTGCCCTTCTCGAAGCTGTTCACCTGCGCTGACCGGCTCGATTGGGTTCTGATGACTGTTGGGTCGCTTGCCGCGGCGGCTCACGGGACGGCTCTGGTGGTGTACTTGCACTACTTCGCTAAGATTATTCATATACTCTGGGTCGAGCGTGACCACAAGGGCGAGCCGCCGCCAATGAACGACGAGCAGTTCCAGAAGTTTATGGATCTTTCTTTGTCCATCGTTTATATTGCCGCTGGTGTTTTTGCTGCTGGTTGGATTGAGGTCTCATGCTGGATTCTGACGGGAGAACGCCAGACTGCTGTCATCAGGTCAAACTATGTTCAAGTATTACTTAACCAGGATATGAGTTTTTTTGATACCTATGGGAACAACGGGGACATTGTGAGCCAAGTATTGAGTGATGTGTTGCTCATTCAGTCTGCTCTTAGTGAAAAAGTTGGAAATTATATTCATAACATGGCTACATTTTTCAGTGGTCTCATTATTGGATTCATCAACTGTTGGCAGATTGCGGCTATAACATTAGCCACCGGTCCTTTTATTGTGGCTGCTGGAGGAATATCAAATATATTTCTTCATAGGCTTGCTGAGAATATTCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTCTCTTACATTAGGACGTTATATGCATTTACAAATGAAACATTGGCCAAGTATTCGTATGCTACATCACTGCAAGCAACTCTAAGATATGGCATATTGATAAGTCTTGTGCAAGGACTTGGACTTGGATTCACTTATGGCCTTGCCATTTGTTCTTGTGCCCTGCAACTGTGGGTTGGAAGGTTCCTGGTTACTAGTCATGAAGCTCATGGTGGTGAAATTATAACAGCCCTTTTTGCTGTAATATTAAGTGGCCTTGGGCTGAATCAAGCGGCAACAAACTTCTACTCATTTGACCAAGGTCGAATTGCTGCTTATAGACTTTTTGAGATGATAAGTCGATCATCCTCTACTGTTAATCACGAGGGAAGTGCCCTAGCGACTGTACAAGGAAATATTGAGTTTCGAAATGTATATTTCAGTTATCTATCTCGTCCTGAGATCCCCATATTGAGTGGTTTTTACCTCACTGTACCTGCTAAGAAAGCTGTAGCACTCGTTGGCAGAAATGGTTCAGGAAAGAGCAGTATTATCCCCCTCATGGAGCGGTTTTATGATCCAACTTTAGGAGAAGTTCTTTTGGATGGAGAAAATATCAAAAACCTGAGACTGGAGTGGCTAAGAAGTCAGATAGGGCTAGTCACACAGGAGCCTGCTTTGCTGAGTTTAAGTATAAGAGACAATATTGCTTATGGGCGGGATGCTACAATGGACCAAATTGAAGAAGCTGCTAAAATAGCGCATGCGCATACATTTATTACCTCACTTGAGGGAGGATACGATACACAGGTGGGAAGAGCAGGCTTAGCATTGACGGAAGAGCAAAAAATAAAACTTTCAATTGCCAGAGCAGTACTTCTGAACCCCTCAATTCTTTTGCTTGATGAGGTCACTGGTGGACTTGATTTTGAAGCTGAAAAAGCCGTTCAAGAAGCTCTAGATGTCCTTATGTTGGGGCGTTCAACTATAATTATAGCTCGGCGGCTTAGTCTTATAAGGAATGCTGATTACATAGCTGTGATGGAGGAAGGCCAACTAGTTGAAATGGGTACCCATGATGAGTTATTAAACCTGGATGGCCTCTATGCGGAGCTTCTCAAAAATGAAGAAGCTGCAAAACTTCCTAGGAGGATGCCAGTGAGCTACAAGGAAACTGCAACTTTCCAAATTGAAAAGGATTCTTTGGCAAGTAATAGCTTCCAAGAACCATCATCTCCGAAAATGATGAAATCACCCTCCCTTCAGAGAACTACTGGCATGTTCCGGATGGGTGATAACACTTTTAACTCACAGGAGTCACCAAAAGCTAAGAGCCCACCAGCAGAGAAAGTGTTGGAAAATGGTCAGGCCTTGGATTCAGAAGATAAGGAACCATCAATAAAAAGGCAGGATAGTTTTGAAATGAGACTACCAGAGTTACCCAAGATTGATGTCCATTCTGCTAATCACCAAACGTCAAATGGTTCGGACCCTGAATCCCCCGTTTCACCCCTTCTGACATCTGATCCGAAAAATGAGCGGTCCCATTCACAAACCTTTAGCCGCCCCCATAGTCATTCAGATGACTTTCCCATGAAAGTGAATGAAGCAAAATGTAGAAATTATAAGAAGGCACCATCATTTTGGAGGCTTGCACAACTTAGTTTTGCTGAATGGCTGTATGCTGTGTTAGGAAGCATTGGTGCTGCTATCTTTGGTTCTTTCAATCCTCTTCTTGCTTATGTAATCGCACTGATAGTAACAGCATACTACAGAGTTGATGAAGGTCGTCACTTGAAACCGGAAGTAGACAAATGGTGCTTGCTCATTGCTTGTATGGGTATAGTGACAGTCGTTGCCAATTTCTTGCAGCATTTCTACTTTGGTATAATGGGTGAGAAAATGACTGAACGAGTTCGTAGAATGATGTTTTCAGCAATGCTACGAAATGAAGCAGGATGGTTTGATGAAGAGGAAAACAGTGCTGATACCTTATCCATGCGCTTGGCCAATGATGCCACATTTGTACGAGCTGCTTTCAGCAATCGGCTGTCAATATTTATACAGGATAGTGCTGCTGTTGTTGTTGCTCTTCTTATCGGGGTGCTGCTACAATGGCGATTAGCACTTGTGGCTTTGGCAACCCTACCCGTTCTCACTATTTCTGCCATTGCACAGAAATTATGGCTTGCTGGTTTTTCAAGGGGAATTCAGGAGATGCACAGGAAGGCATCTTTGGTTCTTGAGGATGCAGTTAGAAACATTTACACTGTTGTAGCATTCTGTGCTGGTAATAAGGTAATGGAGCTCTACAGGTTGCAGCTAAAGAAAATATTCAAGCAGAGTTTCTTTCATGGAATGGCCATTGGCTTTGCATTTGGCTTTTCGCAGTTCCTTCTTTTTGCCTGCAATGCCCTTCTCCTCTGGCACACTGCACGCACTGTGAAAAATAAGCATATGGATCTACCTACTGCTCTCAAGGAGTATATGGTTTTCTCTTTTGCTACATTTGCACTTGTAGAGCCTTTTGGGCTGGCTCCTTACATCCTGAAGCGCCGAAAATCTCTCATTTCAGTTTTTGAAATCATAGATCGAGTGCCGAAGATTGAGCCAGATGAAAACTCAGCGATGAAACCACCTAATGTTTATGGAAGCATTGAGTTGAAAAATGTTGACTTCTGTTATCCAACCCGCCCAGAACTGTTGGTACTGAGCAATTTCAGTCTCAAAGTAAATGGGGGGCAAACTGTAGCTGTGGTGGGAGTTTCAGGGTCAGGAAAGAGCACTATAATTTCTTTGATTGAGAGATTTTATGATCCAGTTGCTGGTCAAGTCTTACTGGATGGTCGAGATCTGAAAGTTTATAATTTGAGATGGTTGAGGAACCACCTAGGTCTTGTTCAGCAGGAACCCATTATATTCTCGACAACCATTCGGGAAAATATTATATATGCAAGGCACAATGCTAGTGAGGCTGAGATGAAAGAGGCAGCCAGAATAGCAAATGCTCACCATTTCATCAGCAGCTTGCCTCATGGTTATGATACGCATGTGGGGATGAGAGGTGTTGACTTGACCCCGGGACAGAAACAGAGAATTGCAATAGCACGCGTCGTGCTAAAGAACGCCCCCATCTTACTATTGGATGAAGCAAGCTCGTCCATTGAATCTGAATCTAGTCGAGTGGTGCAGGAGGCTCTTGATACATTAATCATGGGGAACAAAACAACCATTTTGATAGCCCATAGAGCTGCAATGATGAGGCATGTCGATAACATTGTAGTTCTCAACGGAGGGAGAATTGTGGAAGAAGGGTCCCATGATAATTTAATGTCAAAGAATGGTCTCTATGTCCGTTTGATGCAACCACACTTTGGCAAGGGTTTGCGTCAGCGTCGCCTCGTTTAG

Protein:

Gene family

Gene family	Subfamily
Transporter family	ABC

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G55320.1	1	ABCB20;PGP20\|ATP-binding cassette B20;P-glycoprotein 20
Pyrus communis	PCP030844.1	1	-
Pyrus x bretschneideri	Pbr028190.1	1	-
Rubus occidentalis	Ro07_G18776	1	-
Vitis vinifera	GSVIVT01016617001	1	P-glycoprotein 20
Populus trichocarpa	Potri.010G210100.1	1	P-glycoprotein 20
Nicotiana benthamiana	Niben101Scf00449g03001.1	1	Lipid A export ATP-binding/permease protein MsbA
Nicotiana benthamiana	Niben101Scf02896g00004.1	0.917	Lipid A export ATP-binding/permease protein MsbA
Oryza sativa	LOC_Os01g74470.1	1	"ABC transporter, ATP-binding protein, putative, expressed"
Oryza sativa	LOC_Os03g17180.1	1	"ABC transporter, ATP-binding protein, putative, expressed"
Zea mays	GRMZM5G891159_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0016887	ATPase activity	molecular_function
GO:0016021	integral component of membrane	cellular component
GO:0005524	ATP binding	molecular_function
GO:0055085	transmembrane transport	biological_process

KEGG

KO	Description	Enzyme
K05658	"ATP-binding cassette, subfamily B (MDR/TAP), member 1"	EC:3.6.3.44
K05658	"ATP-binding cassette, sub-family B (MDR/TAP), member 1 [HSA:5243]"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.23	ABC_tran	432	576	4.90E-24
PF00005.23	ABC_tran	1175	1323	2.30E-30

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.43544
SRR5252888	dormant buds	no	dormant buds(0 month)	12.0994
SRR5252889	dormant buds	no	dormant buds(0 month)	11.8349
SRR5252886	dormant buds	no	dormant buds(1 months)	9.48446
SRR5252887	dormant buds	no	dormant buds(1 months)	8.9101
SRR5252884	dormant buds	no	dormant buds(2 months)	10.3846
SRR5252882	dormant buds	no	dormant buds(3 months)	9.22593
SRR5252883	dormant buds	no	dormant buds(3 months)	12.3898
SRR5252880	dormant buds	no	dormant buds(4 months)	8.30837
SRR5252881	dormant buds	no	dormant buds(4 months)	8.7828
SRR5252878	bud break	no	bud break	8.63362
SRR5252879	bud break	no	bud break	8.18337
SRR3744766	flower	no	mature	12.5209
SRR3744767	flower	no	mature	12.7154
SRR3744768	flower	no	mature	12.6895
SRR6308190	stigmas	no	open flowers	3.0699
SRR6308181	styles	no	open flowers	2.94496
SRR6308188	filaments	no	open flowers	2.01695
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.52335
SRR6308192	pollen	no	open flowers	8.53813
SRR6308191	petals	no	open flowers	4.95999
SRR6308194	sepals	no	open flowers	3.62769
SRR6308193	receptacles	no	open flowers	2.00329
SRR6308189	ovaries	no	open flowers	3.21837
SRR3384922	fruit	no	1 week after full bloom	0.843357
SRR3384921	fruit	no	2 week after full bloom	1.62493
SRR3384920	fruit	no	3 week after full bloom	1.67192
SRR3384919	fruit	no	4 week after full bloom	0.950527
SRR3384923	fruit	no	5 week after full bloom	1.29942
SRR3384918	fruit	no	6 week after full bloom	1.00628
SRR3384917	fruit	no	8 week after full bloom	1.4074
SRR3384916	fruit	no	10 week after full bloom	1.23855
SRR3384915	fruit	no	12 week after full bloom	1.16886
SRR3384914	fruit	no	14 week after full bloom	1.77658
SRR3384913	fruit	no	16 week after full bloom	1.49465
SRR3384912	fruit	no	18 week after full bloom	1.34655
SRR3384911	fruit	no	19 week after full bloom	1.5785
SRR3384910	fruit	no	20 week after full bloom	2.47184
SRR768128	whole fruit	no	25 days post anthesis	2.95246
SRR768129	whole fruit	no	35 days post anthesis	1.96771
SRR768130	whole fruit	no	60 days post anthesis	2.92415
SRR768131	whole fruit	no	87 days post anthesis	4.11989
SRR7343308	immature fruit flesh	no	immature	8.95793
SRR7343309	immature fruit flesh	no	immature	7.83985
SRR6320494	ripe fruit flesh	no	mature	5.75456
SRR5405143	ripe fruit peel	no	mature	7.36008
SRR6320572	ripe fruit peel	no	mature	5.53551
SRR7403504	fruit	uninfected	mature	4.60817
SRR7403506	fruit	uninfected	mature	4.62992
SRR7403507	fruit	uninfected	mature	4.36719
SRR7403500	fruit	infected with penicillium expansum	mature	35.2208
SRR7403501	fruit	infected with penicillium expansum	mature	33.1887
SRR7403508	fruit	infected with penicillium expansum	mature	35.7844
SRR7403502	fruit	infected with penicillium expansum	mature	26.4829
SRR7403503	fruit	infected with penicillium expansum	mature	27.809
SRR7403505	fruit	infected with penicillium expansum	mature	27.7162
SRR1613973	Central seeds	no	20DAPF	2.11469
SRR1613974	Central seeds	no	20DAPF	2.26615
SRR1613975	Central seeds	no	20DAPF	1.90168
SRR1613976	Lateral seeds	no	20DAPF	2.24105
SRR1613977	Lateral seeds	no	20DAPF	1.73939
SRR1613978	Lateral seeds	no	20DAPF	1.94425
SRR3744786	stem	no	mature	14.4636
SRR3744787	stem	no	mature	14.51
SRR3744772	stem	no	mature	15.5207
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.5147
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.73506
SRR1089478	leaf	Virus-free	plantlets	10.8192
SRR1089477	leaf	ASGV-infected	plantlets	9.32759
SRR767660	leaf	uninfected	fully developed	1.78631
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	6.7259
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.04621
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.28168
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.06699
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.27072
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.58425
SRR6308182	young leaf	no	immature leaves	3.34556
SRR3744769	leaf	no	mature	14.8965
SRR3744770	leaf	no	mature	15.7856
SRR3744771	leaf	no	mature	15.6601
SRR5405145	leaf	no	mature	12.9563
SRR6320561	leaf	no	mature	8.44838