Gene detail

Detail information of MD01G1121500 Annotation

Gene ID	Annotation
MD01G1121500	PsbP-like protein 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1121500	mRNA	Chr01	23511380	23513553	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G39470.1	1	PnsL1;PPL2\|Photosynthetic NDH subcomplex L 1;PsbP-like protein 2
Arabidopsis thaliana	AT2G39470.2	0.89	PnsL1;PPL2\|Photosynthetic NDH subcomplex L 1;PsbP-like protein 2
Prunus persica	Prupe.2G229200.1.p	1	PsbP-like protein 2
Pyrus x bretschneideri	Pbr032327.1	1	-
Rosa multiflora	Rmu_sc0004311.1_g000017.1	1	-
Rubus occidentalis	Ro07_G18775	1	-
Fragaria vesca	mrna26713.1	1	PsbP-like protein 2
Vitis vinifera	GSVIVT01016616001	1	PsbP-like protein 2
Populus trichocarpa	Potri.010G210000.1	1	PsbP-like protein 2
Nicotiana benthamiana	Niben101Scf01982g00002.1	1	PsbP-like protein 2 LENGTH=238
Oryza sativa	LOC_Os03g17174.1	1	"PsbP, putative, expressed"
Zea mays	GRMZM2G471904_P01	1	ATP binding microtubule motor family protein

Gene Ontology

GO term	Description	Category
GO:0019898	extrinsic component of membrane	cellular component
GO:0009654	photosystem II oxygen evolving complex	cellular component
GO:0015979	photosynthesis	biological_process
GO:0005509	calcium ion binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	69.4914
SRR5252888	dormant buds	no	dormant buds(0 month)	2.96384
SRR5252889	dormant buds	no	dormant buds(0 month)	3.43345
SRR5252886	dormant buds	no	dormant buds(1 months)	2.50998
SRR5252887	dormant buds	no	dormant buds(1 months)	0.800286
SRR5252884	dormant buds	no	dormant buds(2 months)	1.49107
SRR5252882	dormant buds	no	dormant buds(3 months)	3.84546
SRR5252883	dormant buds	no	dormant buds(3 months)	1.74595
SRR5252880	dormant buds	no	dormant buds(4 months)	2.34532
SRR5252881	dormant buds	no	dormant buds(4 months)	2.24823
SRR5252878	bud break	no	bud break	6.79567
SRR5252879	bud break	no	bud break	8.12438
SRR3744766	flower	no	mature	0.455521
SRR3744767	flower	no	mature	1.04066
SRR3744768	flower	no	mature	0.93472
SRR6308190	stigmas	no	open flowers	8.01409
SRR6308181	styles	no	open flowers	6.01453
SRR6308188	filaments	no	open flowers	1.29643
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.368126
SRR6308194	sepals	no	open flowers	11.2419
SRR6308193	receptacles	no	open flowers	4.41051
SRR6308189	ovaries	no	open flowers	7.96973
SRR3384922	fruit	no	1 week after full bloom	7.30147
SRR3384921	fruit	no	2 week after full bloom	6.06287
SRR3384920	fruit	no	3 week after full bloom	17.1593
SRR3384919	fruit	no	4 week after full bloom	13.0344
SRR3384923	fruit	no	5 week after full bloom	18.6772
SRR3384918	fruit	no	6 week after full bloom	10.4424
SRR3384917	fruit	no	8 week after full bloom	17.7683
SRR3384916	fruit	no	10 week after full bloom	16.525
SRR3384915	fruit	no	12 week after full bloom	12.7245
SRR3384914	fruit	no	14 week after full bloom	14.7489
SRR3384913	fruit	no	16 week after full bloom	2.71802
SRR3384912	fruit	no	18 week after full bloom	3.43793
SRR3384911	fruit	no	19 week after full bloom	4.78652
SRR3384910	fruit	no	20 week after full bloom	0.916108
SRR768128	whole fruit	no	25 days post anthesis	15.5892
SRR768129	whole fruit	no	35 days post anthesis	7.37446
SRR768130	whole fruit	no	60 days post anthesis	6.84435
SRR768131	whole fruit	no	87 days post anthesis	2.82518
SRR7343308	immature fruit flesh	no	immature	4.14257
SRR7343309	immature fruit flesh	no	immature	8.27669
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.11076
SRR7403506	fruit	uninfected	mature	0.234003
SRR7403507	fruit	uninfected	mature	0.208379
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.153121
SRR7403502	fruit	infected with penicillium expansum	mature	0.118385
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.563393
SRR1613974	Central seeds	no	20DAPF	0.22409
SRR1613975	Central seeds	no	20DAPF	0.470184
SRR1613976	Lateral seeds	no	20DAPF	0.34911
SRR1613977	Lateral seeds	no	20DAPF	0.7258
SRR1613978	Lateral seeds	no	20DAPF	0.723533
SRR3744786	stem	no	mature	0.328136
SRR3744787	stem	no	mature	0.0928524
SRR3744772	stem	no	mature	0.416722
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.13433
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.8604
SRR1089478	leaf	Virus-free	plantlets	9.35786
SRR1089477	leaf	ASGV-infected	plantlets	9.62901
SRR767660	leaf	uninfected	fully developed	25.5454
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	10.8459
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	18.186
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	30.0095
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	26.4991
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	12.5303
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	12.2066
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	8.63907
SRR6308182	young leaf	no	immature leaves	4.53804
SRR3744769	leaf	no	mature	4.01083
SRR3744770	leaf	no	mature	4.65729
SRR3744771	leaf	no	mature	4.09944
SRR5405145	leaf	no	mature	20.4815
SRR6320561	leaf	no	mature	21.4038