Gene detail

Detail information of MD01G1132900 Annotation

Gene ID	Annotation
MD01G1132900	high mobility group B1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1132900	mRNA	Chr01	24274918	24278209	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG
Epigenetic Regulators	HMGB

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G51880.4	1	AtHMGB1;HMGB1;NFD1\|high mobility group B1;NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1
Arabidopsis thaliana	AT3G51880.1	0.922	AtHMGB1;HMGB1;NFD1\|high mobility group B1;NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1
Arabidopsis thaliana	AT3G51880.3	0.922	AtHMGB1;HMGB1;NFD1\|high mobility group B1;NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1
Arabidopsis thaliana	AT3G51880.2	0.899	AtHMGB1;HMGB1;NFD1\|high mobility group B1;NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1
Prunus persica	Prupe.2G249000.2.p	1	high mobility group B1
Prunus persica	Prupe.2G249000.1.p	1	high mobility group B1
Pyrus communis	PCP015749.1	1	-
Pyrus x bretschneideri	Pbr009518.1	1	-
Rosa multiflora	Rmu_sc0005056.1_g000014.1	1	-
Rubus occidentalis	Ro07_G07847	1	-
Fragaria vesca	mrna20961.1	1	high mobility group B1
Vitis vinifera	GSVIVT01033966001	1	high mobility group B1
Populus trichocarpa	Potri.010G189900.1	1	high mobility group B1
Nicotiana benthamiana	Niben101Scf08975g01001.1	1	High mobility group B protein 1

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
K10802	high mobility group protein B1	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00505.15	HMG_box	56	125	1.40E-22

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	54.4453
SRR5252888	dormant buds	no	dormant buds(0 month)	98.1045
SRR5252889	dormant buds	no	dormant buds(0 month)	109.395
SRR5252886	dormant buds	no	dormant buds(1 months)	109.517
SRR5252887	dormant buds	no	dormant buds(1 months)	113.797
SRR5252884	dormant buds	no	dormant buds(2 months)	130.645
SRR5252882	dormant buds	no	dormant buds(3 months)	101.156
SRR5252883	dormant buds	no	dormant buds(3 months)	86.9452
SRR5252880	dormant buds	no	dormant buds(4 months)	89.0664
SRR5252881	dormant buds	no	dormant buds(4 months)	83.9891
SRR5252878	bud break	no	bud break	58.2647
SRR5252879	bud break	no	bud break	51.6874
SRR3744766	flower	no	mature	78.8143
SRR3744767	flower	no	mature	74.1142
SRR3744768	flower	no	mature	75.1007
SRR6308190	stigmas	no	open flowers	91.6681
SRR6308181	styles	no	open flowers	92.1685
SRR6308188	filaments	no	open flowers	47.9681
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	48.1323
SRR6308192	pollen	no	open flowers	2.25499
SRR6308191	petals	no	open flowers	59.2138
SRR6308194	sepals	no	open flowers	89.4325
SRR6308193	receptacles	no	open flowers	60.9418
SRR6308189	ovaries	no	open flowers	82.6492
SRR3384922	fruit	no	1 week after full bloom	108.7
SRR3384921	fruit	no	2 week after full bloom	94.8567
SRR3384920	fruit	no	3 week after full bloom	67.8308
SRR3384919	fruit	no	4 week after full bloom	77.3967
SRR3384923	fruit	no	5 week after full bloom	138.98
SRR3384918	fruit	no	6 week after full bloom	104.545
SRR3384917	fruit	no	8 week after full bloom	99.5914
SRR3384916	fruit	no	10 week after full bloom	80.1645
SRR3384915	fruit	no	12 week after full bloom	121.034
SRR3384914	fruit	no	14 week after full bloom	81.4242
SRR3384913	fruit	no	16 week after full bloom	135.96
SRR3384912	fruit	no	18 week after full bloom	118.66
SRR3384911	fruit	no	19 week after full bloom	186.763
SRR3384910	fruit	no	20 week after full bloom	131.637
SRR768128	whole fruit	no	25 days post anthesis	71.7033
SRR768129	whole fruit	no	35 days post anthesis	91.806
SRR768130	whole fruit	no	60 days post anthesis	78.8187
SRR768131	whole fruit	no	87 days post anthesis	70.3686
SRR7343308	immature fruit flesh	no	immature	95.2851
SRR7343309	immature fruit flesh	no	immature	118.691
SRR6320494	ripe fruit flesh	no	mature	127.285
SRR5405143	ripe fruit peel	no	mature	41.6672
SRR6320572	ripe fruit peel	no	mature	60.7227
SRR7403504	fruit	uninfected	mature	146.055
SRR7403506	fruit	uninfected	mature	144.597
SRR7403507	fruit	uninfected	mature	144.25
SRR7403500	fruit	infected with penicillium expansum	mature	9.88712
SRR7403501	fruit	infected with penicillium expansum	mature	10.1577
SRR7403508	fruit	infected with penicillium expansum	mature	10.9839
SRR7403502	fruit	infected with penicillium expansum	mature	13.4197
SRR7403503	fruit	infected with penicillium expansum	mature	14.4033
SRR7403505	fruit	infected with penicillium expansum	mature	12.631
SRR1613973	Central seeds	no	20DAPF	36.5352
SRR1613974	Central seeds	no	20DAPF	38.4092
SRR1613975	Central seeds	no	20DAPF	40.1825
SRR1613976	Lateral seeds	no	20DAPF	42.2796
SRR1613977	Lateral seeds	no	20DAPF	47.2198
SRR1613978	Lateral seeds	no	20DAPF	42.169
SRR3744786	stem	no	mature	92.086
SRR3744787	stem	no	mature	97.2285
SRR3744772	stem	no	mature	87.1428
SRX765691	seedling shoot apex	no	4-6 week old seedling	37.2733
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	33.3171
SRR1089478	leaf	Virus-free	plantlets	44.015
SRR1089477	leaf	ASGV-infected	plantlets	49.3746
SRR767660	leaf	uninfected	fully developed	67.4345
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	31.0711
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	35.5187
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	62.08
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	72.7258
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	95.6549
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	69.1811
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	77.2486
SRR6308182	young leaf	no	immature leaves	35.7696
SRR3744769	leaf	no	mature	67.1859
SRR3744770	leaf	no	mature	66.4262
SRR3744771	leaf	no	mature	70.6553
SRR5405145	leaf	no	mature	71.3427
SRR6320561	leaf	no	mature	118.629