Gene detail

Detail information of MD01G1143800 Annotation

Gene ID	Annotation
MD01G1143800	Peptide chain release factor 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0168	specification of floral organ identity meristem development petal development anthocyanin-containing compound biosynthetic process plastoglobule gastric triacylglycerol lipase [EC:3.1.1.3] cystinosin stamen development plant-type cell wall modification pollen tube growth plant ovule development translation release factor activity protein dimerization activity translational termination

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1143800	mRNA	Chr01	25416515	25418498	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
--	--	--	--

Gene Ontology

GO term	Description	Category
GO:0005737	cytoplasm	cellular component
GO:0006415	translational termination	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03462.14	PCRF	5	70	2.20E-09

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.180237
SRR5252888	dormant buds	no	dormant buds(0 month)	0.217894
SRR5252889	dormant buds	no	dormant buds(0 month)	0.420697
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0980581
SRR5252884	dormant buds	no	dormant buds(2 months)	0.156599
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0.313494
SRR5252881	dormant buds	no	dormant buds(4 months)	0.173983
SRR5252878	bud break	no	bud break	0.156125
SRR5252879	bud break	no	bud break	0.173125
SRR3744766	flower	no	mature	1.02719
SRR3744767	flower	no	mature	1.33622
SRR3744768	flower	no	mature	1.0851
SRR6308190	stigmas	no	open flowers	0.12383
SRR6308181	styles	no	open flowers	0.531826
SRR6308188	filaments	no	open flowers	4.80243
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	8.07558
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	3.96169
SRR6308194	sepals	no	open flowers	0.662082
SRR6308193	receptacles	no	open flowers	0.633547
SRR6308189	ovaries	no	open flowers	0.68617
SRR3384922	fruit	no	1 week after full bloom	0.0735245
SRR3384921	fruit	no	2 week after full bloom	0.159172
SRR3384920	fruit	no	3 week after full bloom	0.140153
SRR3384919	fruit	no	4 week after full bloom	0.194221
SRR3384923	fruit	no	5 week after full bloom	0.0615676
SRR3384918	fruit	no	6 week after full bloom	0.205612
SRR3384917	fruit	no	8 week after full bloom	0.494752
SRR3384916	fruit	no	10 week after full bloom	0.449907
SRR3384915	fruit	no	12 week after full bloom	0.456279
SRR3384914	fruit	no	14 week after full bloom	0.0737542
SRR3384913	fruit	no	16 week after full bloom	0.434351
SRR3384912	fruit	no	18 week after full bloom	0.733708
SRR3384911	fruit	no	19 week after full bloom	0.312761
SRR3384910	fruit	no	20 week after full bloom	0.0612208
SRR768128	whole fruit	no	25 days post anthesis	0.176687
SRR768129	whole fruit	no	35 days post anthesis	0.0970142
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0.434657
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.10939
SRR1613974	Central seeds	no	20DAPF	0.0601229
SRR1613975	Central seeds	no	20DAPF	0.0408131
SRR1613976	Lateral seeds	no	20DAPF	0.0321975
SRR1613977	Lateral seeds	no	20DAPF	0.0373611
SRR1613978	Lateral seeds	no	20DAPF	0.0381312
SRR3744786	stem	no	mature	0.37504
SRR3744787	stem	no	mature	0.168733
SRR3744772	stem	no	mature	0.168288
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.115352
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0846715
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0.218609
SRR767660	leaf	uninfected	fully developed	2.14307
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.514759
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.742002
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.910959
SRR6308182	young leaf	no	immature leaves	0.177316
SRR3744769	leaf	no	mature	0.313145
SRR3744770	leaf	no	mature	0.330647
SRR3744771	leaf	no	mature	0.326023
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0.552611