Gene detail

Detail information of MD01G1144600 Annotation

Gene ID	Annotation
MD01G1144600	RING/FYVE/PHD zinc finger superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0506	xanthine dehydrogenase/oxidase [EC:1.17.1.4 1.17.3.2] purine nucleobase catabolic process superoxide anion generation xanthine metabolic process sucrose catabolic process xanthine dehydrogenase activity (1->3)-beta-D-glucan binding sucrose alpha-glucosidase activity beta-fructofuranosidase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1144600	mRNA	Chr01	25491565	25495208	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G05830.1	1	RING/FYVE/PHD zinc finger superfamily protein
Pyrus communis	PCP022849.1	1	-
Pyrus x bretschneideri	Pbr011370.1	1	-
Rosa multiflora	Rmu_sc0004250.1_g000028.1	1	-
Rubus occidentalis	Ro07_G07801	1	-
Fragaria vesca	mrna20887.1	1	RING/FYVE/PHD zinc finger superfamily protein
Vitis vinifera	GSVIVT01016394001	1	RING/FYVE/PHD zinc finger superfamily protein
Populus trichocarpa	Potri.008G062600.1	1	RING/FYVE/PHD zinc finger superfamily protein
Populus trichocarpa	Potri.010G195100.1	1	RING/FYVE/PHD zinc finger superfamily protein
Nicotiana benthamiana	Niben101Scf05836g06001.1	1	RING/FYVE/PHD zinc finger superfamily protein LENGTH=204
Nicotiana benthamiana	Niben101Scf12045g02004.1	0.759	RING/FYVE/PHD zinc finger superfamily protein LENGTH=204
Oryza sativa	LOC_Os01g53130.1	1	"zinc finger, C3HC4 type domain containing protein, expressed"

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12906.3	RINGv	83	134	1.10E-09

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	6.86883
SRR5252888	dormant buds	no	dormant buds(0 month)	3.15491
SRR5252889	dormant buds	no	dormant buds(0 month)	5.07611
SRR5252886	dormant buds	no	dormant buds(1 months)	4.74985
SRR5252887	dormant buds	no	dormant buds(1 months)	2.12969
SRR5252884	dormant buds	no	dormant buds(2 months)	3.52709
SRR5252882	dormant buds	no	dormant buds(3 months)	5.05354
SRR5252883	dormant buds	no	dormant buds(3 months)	1.51434
SRR5252880	dormant buds	no	dormant buds(4 months)	8.19564
SRR5252881	dormant buds	no	dormant buds(4 months)	10.1465
SRR5252878	bud break	no	bud break	9.67013
SRR5252879	bud break	no	bud break	10.7231
SRR3744766	flower	no	mature	5.6449
SRR3744767	flower	no	mature	6.19567
SRR3744768	flower	no	mature	5.81588
SRR6308190	stigmas	no	open flowers	0.500442
SRR6308181	styles	no	open flowers	1.89292
SRR6308188	filaments	no	open flowers	2.58625
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.13296
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.883691
SRR6308194	sepals	no	open flowers	0.642362
SRR6308193	receptacles	no	open flowers	4.01277
SRR6308189	ovaries	no	open flowers	4.43993
SRR3384922	fruit	no	1 week after full bloom	12.8924
SRR3384921	fruit	no	2 week after full bloom	23.6215
SRR3384920	fruit	no	3 week after full bloom	11.6678
SRR3384919	fruit	no	4 week after full bloom	17.4448
SRR3384923	fruit	no	5 week after full bloom	9.70632
SRR3384918	fruit	no	6 week after full bloom	15.7115
SRR3384917	fruit	no	8 week after full bloom	6.12851
SRR3384916	fruit	no	10 week after full bloom	3.87732
SRR3384915	fruit	no	12 week after full bloom	2.93607
SRR3384914	fruit	no	14 week after full bloom	1.12716
SRR3384913	fruit	no	16 week after full bloom	0.978237
SRR3384912	fruit	no	18 week after full bloom	0.983598
SRR3384911	fruit	no	19 week after full bloom	0.314462
SRR3384910	fruit	no	20 week after full bloom	0.738645
SRR768128	whole fruit	no	25 days post anthesis	9.96009
SRR768129	whole fruit	no	35 days post anthesis	27.3441
SRR768130	whole fruit	no	60 days post anthesis	9.56197
SRR768131	whole fruit	no	87 days post anthesis	3.3522
SRR7343308	immature fruit flesh	no	immature	12.2309
SRR7343309	immature fruit flesh	no	immature	11.5093
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.585639
SRR6320572	ripe fruit peel	no	mature	4.91425
SRR7403504	fruit	uninfected	mature	0.393891
SRR7403506	fruit	uninfected	mature	0.34674
SRR7403507	fruit	uninfected	mature	0.205847
SRR7403500	fruit	infected with penicillium expansum	mature	0.424179
SRR7403501	fruit	infected with penicillium expansum	mature	0.125894
SRR7403508	fruit	infected with penicillium expansum	mature	0.272269
SRR7403502	fruit	infected with penicillium expansum	mature	0.140336
SRR7403503	fruit	infected with penicillium expansum	mature	0.391859
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	3.40318
SRR1613974	Central seeds	no	20DAPF	3.77967
SRR1613975	Central seeds	no	20DAPF	3.51968
SRR1613976	Lateral seeds	no	20DAPF	3.73685
SRR1613977	Lateral seeds	no	20DAPF	3.00117
SRR1613978	Lateral seeds	no	20DAPF	2.84277
SRR3744786	stem	no	mature	5.39896
SRR3744787	stem	no	mature	6.01668
SRR3744772	stem	no	mature	5.65105
SRX765691	seedling shoot apex	no	4-6 week old seedling	28.5557
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	14.1303
SRR1089478	leaf	Virus-free	plantlets	3.29366
SRR1089477	leaf	ASGV-infected	plantlets	3.17155
SRR767660	leaf	uninfected	fully developed	3.80119
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	13.0381
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.15596
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.97615
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.79727
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.78509
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.49687
SRR6308182	young leaf	no	immature leaves	15.9888
SRR3744769	leaf	no	mature	5.59882
SRR3744770	leaf	no	mature	4.98911
SRR3744771	leaf	no	mature	6.21633
SRR5405145	leaf	no	mature	1.01155
SRR6320561	leaf	no	mature	2.82562