Gene detail

Detail information of MD01G1182600 Annotation

Gene ID	Annotation
MD01G1182600	peroxin 11B

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1182600	mRNA	Chr01	28120533	28121213	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G47430.1	1	PEX11B\|peroxin 11B
Prunus persica	Prupe.2G276800.1.p	1	peroxin 11B
Pyrus communis	PCP014351.1	1	-
Pyrus x bretschneideri	Pbr031739.1	1	-
Pyrus x bretschneideri	Pbr017501.1	1	-
Rosa multiflora	Rmu_co8391081.1_g000001.1	1	-
Rubus occidentalis	Ro07_G12310	1	-
Vitis vinifera	GSVIVT01018663001	1	peroxin 11B
Solanum lycopersicum	Solyc03g093180.1.1	1	peroxin 11B
Populus trichocarpa	Potri.001G124400.1	1	peroxin 11B
Nicotiana benthamiana	Niben101Scf05645g06005.1	1	Peroxisomal membrane protein 11-4
Nicotiana benthamiana	Niben101Scf34874g00008.1	0.87	Peroxisomal membrane protein 11-4
Oryza sativa	LOC_Os04g45210.1	1	"peroxisomal biogenesis factor 11, putative, expressed"
Zea mays	GRMZM2G003769_P01	1	Peroxisomal biogenesis factor 11 family protein

Gene Ontology

GO term	Description	Category
GO:0005779	integral component of peroxisomal membrane	cellular component
GO:0016559	peroxisome fission	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	38.6287
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.183104
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0.341794
SRR5252883	dormant buds	no	dormant buds(3 months)	0.558664
SRR5252880	dormant buds	no	dormant buds(4 months)	0.682226
SRR5252881	dormant buds	no	dormant buds(4 months)	0.189311
SRR5252878	bud break	no	bud break	0.679517
SRR5252879	bud break	no	bud break	0.753511
SRR3744766	flower	no	mature	0.597455
SRR3744767	flower	no	mature	0.395855
SRR3744768	flower	no	mature	0.882761
SRR6308190	stigmas	no	open flowers	8.64331
SRR6308181	styles	no	open flowers	2.23928
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.34708
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	2.59472
SRR6308194	sepals	no	open flowers	8.10855
SRR6308193	receptacles	no	open flowers	0.891464
SRR6308189	ovaries	no	open flowers	1.62635
SRR3384922	fruit	no	1 week after full bloom	2.08075
SRR3384921	fruit	no	2 week after full bloom	0.173253
SRR3384920	fruit	no	3 week after full bloom	3.05104
SRR3384919	fruit	no	4 week after full bloom	1.40935
SRR3384923	fruit	no	5 week after full bloom	2.14446
SRR3384918	fruit	no	6 week after full bloom	2.23802
SRR3384917	fruit	no	8 week after full bloom	2.36949
SRR3384916	fruit	no	10 week after full bloom	2.23866
SRR3384915	fruit	no	12 week after full bloom	0.165548
SRR3384914	fruit	no	14 week after full bloom	2.40837
SRR3384913	fruit	no	16 week after full bloom	1.32377
SRR3384912	fruit	no	18 week after full bloom	0.35494
SRR3384911	fruit	no	19 week after full bloom	2.04258
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	1.33668
SRR768129	whole fruit	no	35 days post anthesis	0.838787
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0
SRR1613975	Central seeds	no	20DAPF	0
SRR1613976	Lateral seeds	no	20DAPF	0
SRR1613977	Lateral seeds	no	20DAPF	0
SRR1613978	Lateral seeds	no	20DAPF	0
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.273077
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.960521
SRR1089478	leaf	Virus-free	plantlets	13.031
SRR1089477	leaf	ASGV-infected	plantlets	16.9251
SRR767660	leaf	uninfected	fully developed	75.4527
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	36.7269
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	63.3885
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	71.3709
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	83.3807
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	38.3016
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	28.3047
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	41.0923
SRR6308182	young leaf	no	immature leaves	2.05638
SRR3744769	leaf	no	mature	7.64008
SRR3744770	leaf	no	mature	6.42552
SRR3744771	leaf	no	mature	5.79022
SRR5405145	leaf	no	mature	16.3317
SRR6320561	leaf	no	mature	27.0642