Gene detail

Detail information of MD01G1192100 Annotation

Gene ID	Annotation
MD01G1192100	gibberellin 20 oxidase 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0245	E3 ubiquitin-protein ligase MUL1 [EC:2.3.2.27] gibberellin 20-oxidase [EC:1.14.11.12]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1192100	mRNA	Chr01	29124515	29126551	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.2G286800.1.p	1	gibberellin 20 oxidase 2
Pyrus communis	PCP002218.1	1	-
Pyrus x bretschneideri	Pbr013897.1	1	-
Rosa multiflora	Rmu_ssc0000116.1_g000048.1	1	-
Rubus occidentalis	Ro07_G09516	1	-
Fragaria vesca	mrna13360.1	1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Populus trichocarpa	Potri.012G132400.1	1	gibberellin 20 oxidase 2
Populus trichocarpa	Potri.015G134600.1	0.682	gibberellin 20 oxidase 2
Nicotiana benthamiana	Niben101Scf02083g03005.1	1	Gibberellin 20 oxidase 1
Oryza sativa	LOC_Os03g63970.1	1	"gibberellin 20 oxidase 1, putative, expressed"
Oryza sativa	LOC_Os07g07420.1	1	"gibberellin 20 oxidase 1-B, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0055114	oxidation-reduction process	biological_process
GO:0005506	iron ion binding	molecular_function
GO:0016491	oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
K05282	gibberellin 20-oxidase	EC:1.14.11.12

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03171.16	2OG-FeII_Oxy	235	333	2.70E-27

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	6.76905
SRR5252888	dormant buds	no	dormant buds(0 month)	0.874375
SRR5252889	dormant buds	no	dormant buds(0 month)	2.36347
SRR5252886	dormant buds	no	dormant buds(1 months)	0.493653
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0.314204
SRR5252882	dormant buds	no	dormant buds(3 months)	0.210086
SRR5252883	dormant buds	no	dormant buds(3 months)	0.114462
SRR5252880	dormant buds	no	dormant buds(4 months)	3.14501
SRR5252881	dormant buds	no	dormant buds(4 months)	2.26904
SRR5252878	bud break	no	bud break	3.02811
SRR5252879	bud break	no	bud break	2.02628
SRR3744766	flower	no	mature	0.10974
SRR3744767	flower	no	mature	0.0192013
SRR3744768	flower	no	mature	0.115725
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.356216
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.442523
SRR3384921	fruit	no	2 week after full bloom	0.425781
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0.0865897
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.414387
SRR768129	whole fruit	no	35 days post anthesis	0.910116
SRR768130	whole fruit	no	60 days post anthesis	1.85287
SRR768131	whole fruit	no	87 days post anthesis	0.164079
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0.070575
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	4.00786
SRR1613974	Central seeds	no	20DAPF	4.38743
SRR1613975	Central seeds	no	20DAPF	4.5599
SRR1613976	Lateral seeds	no	20DAPF	5.59583
SRR1613977	Lateral seeds	no	20DAPF	4.11155
SRR1613978	Lateral seeds	no	20DAPF	4.5801
SRR3744786	stem	no	mature	0.112906
SRR3744787	stem	no	mature	0.156371
SRR3744772	stem	no	mature	0.111401
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.09553
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.38901
SRR1089478	leaf	Virus-free	plantlets	1.98577
SRR1089477	leaf	ASGV-infected	plantlets	5.50123
SRR767660	leaf	uninfected	fully developed	5.46764
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	20.5585
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	8.46833
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.23912
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.7455
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.75842
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.91369
SRR6308182	young leaf	no	immature leaves	5.62454
SRR3744769	leaf	no	mature	1.59276
SRR3744770	leaf	no	mature	1.57848
SRR3744771	leaf	no	mature	1.84115
SRR5405145	leaf	no	mature	6.22703
SRR6320561	leaf	no	mature	5.82635