Gene detail

Detail information of MD01G1193500 Annotation

Gene ID	Annotation
MD01G1193500	AGAMOUS-like 42

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0171	floral organ senescence abscission MADS-box transcription enhancer factor 2A geranylgeranyl transferase type-1 subunit beta [EC:2.5.1.59] RING finger protein 113A high mobility group protein B3 protein KTI12

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1193500	mRNA	Chr01	29244592	29249892	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	MIKC
Epigenetic Regulators	FLCP

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.2G287500.1.p	1	AGAMOUS-like 42
Pyrus communis	PCP002223.1	1	-
Pyrus x bretschneideri	Pbr032787.2	1	-
Rubus occidentalis	Ro07_G09508	1	-
Fragaria vesca	mrna13354.1	1	AGAMOUS-like 42
Solanum lycopersicum	Solyc03g006830.2.1	1	AGAMOUS-like 42

Gene Ontology

GO term	Description	Category
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0005634	nucleus	cellular component
GO:0003677	DNA binding	molecular_function
GO:0046983	protein dimerization activity	molecular_function

KEGG

KO	Description	Enzyme
K09260	MADS-box transcription enhancer factor 2A	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00319.14	SRF-TF	3	50	2.90E-26

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.0604094
SRR5252888	dormant buds	no	dormant buds(0 month)	18.9956
SRR5252889	dormant buds	no	dormant buds(0 month)	18.6199
SRR5252886	dormant buds	no	dormant buds(1 months)	17.9429
SRR5252887	dormant buds	no	dormant buds(1 months)	15.1243
SRR5252884	dormant buds	no	dormant buds(2 months)	12.3393
SRR5252882	dormant buds	no	dormant buds(3 months)	16.3253
SRR5252883	dormant buds	no	dormant buds(3 months)	16.2829
SRR5252880	dormant buds	no	dormant buds(4 months)	14.1905
SRR5252881	dormant buds	no	dormant buds(4 months)	19.5427
SRR5252878	bud break	no	bud break	19.4999
SRR5252879	bud break	no	bud break	10.3037
SRR3744766	flower	no	mature	2.23921
SRR3744767	flower	no	mature	3.72839
SRR3744768	flower	no	mature	2.97458
SRR6308190	stigmas	no	open flowers	1.77164
SRR6308181	styles	no	open flowers	3.49346
SRR6308188	filaments	no	open flowers	0.807939
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.555147
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	2.41514
SRR6308194	sepals	no	open flowers	0.44587
SRR6308193	receptacles	no	open flowers	2.04451
SRR6308189	ovaries	no	open flowers	2.60009
SRR3384922	fruit	no	1 week after full bloom	0.246517
SRR3384921	fruit	no	2 week after full bloom	0.266839
SRR3384920	fruit	no	3 week after full bloom	0.176217
SRR3384919	fruit	no	4 week after full bloom	0.108533
SRR3384923	fruit	no	5 week after full bloom	0.0516068
SRR3384918	fruit	no	6 week after full bloom	0.114898
SRR3384917	fruit	no	8 week after full bloom	0.0829416
SRR3384916	fruit	no	10 week after full bloom	0.053874
SRR3384915	fruit	no	12 week after full bloom	0.0637431
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0.102632
SRR768128	whole fruit	no	25 days post anthesis	0.0741233
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0.364196
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.094563
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0
SRR1613975	Central seeds	no	20DAPF	0
SRR1613976	Lateral seeds	no	20DAPF	0
SRR1613977	Lateral seeds	no	20DAPF	0
SRR1613978	Lateral seeds	no	20DAPF	0
SRR3744786	stem	no	mature	18.0332
SRR3744787	stem	no	mature	17.6756
SRR3744772	stem	no	mature	17.7133
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.0971508
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.58939
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.155975
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	6.49429
SRR3744769	leaf	no	mature	13.3054
SRR3744770	leaf	no	mature	12.5846
SRR3744771	leaf	no	mature	13.8181
SRR5405145	leaf	no	mature	4.00513
SRR6320561	leaf	no	mature	3.71706