Gene detail

Detail information of MD01G1194300 Annotation

Gene ID	Annotation
MD01G1194300	Glucose-methanol-choline (GMC) oxidoreductase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1194300	mRNA	Chr01	29313749	29316765	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G51950.1	1	Glucose-methanol-choline (GMC) oxidoreductase family protein
Arabidopsis thaliana	AT5G51950.2	0.857	Glucose-methanol-choline (GMC) oxidoreductase family protein
Prunus persica	Prupe.2G288400.1.p	1	Glucose-methanol-choline (GMC) oxidoreductase family protein
Pyrus communis	PCP002229.1	1	-
Pyrus x bretschneideri	Pbr032781.1	1	-
Rosa multiflora	Rmu_sc0016049.1_g000002.1	1	-
Rosa multiflora	Rmu_sc0001308.1_g000024.1	0.69	-
Rubus occidentalis	Ro07_G09497	1	-
Fragaria vesca	mrna13343.1	1	Glucose-methanol-choline (GMC) oxidoreductase family protein

Gene Ontology

GO term	Description	Category
GO:0050660	flavin adenine dinucleotide binding	molecular_function
GO:0008812	choline dehydrogenase activity	molecular_function
GO:0055114	oxidation-reduction process	biological_process
GO:0006066	alcohol metabolic process	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00732.15	GMC_oxred_N	44	319	2.00E-31
PF05199.9	GMC_oxred_C	414	559	8.40E-26

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0
SRR5252888	dormant buds	no	dormant buds(0 month)	0.140815
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0.101299
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0.201793
SRR5252879	bud break	no	bud break	0.33565
SRR3744766	flower	no	mature	0.0423881
SRR3744767	flower	no	mature	0.148313
SRR3744768	flower	no	mature	0.148928
SRR6308190	stigmas	no	open flowers	0.0807263
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.0688822
SRR6308189	ovaries	no	open flowers	0.0559845
SRR3384922	fruit	no	1 week after full bloom	0.52262
SRR3384921	fruit	no	2 week after full bloom	0.668558
SRR3384920	fruit	no	3 week after full bloom	0.271697
SRR3384919	fruit	no	4 week after full bloom	0.167339
SRR3384923	fruit	no	5 week after full bloom	0.159138
SRR3384918	fruit	no	6 week after full bloom	0.0885766
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0.0415322
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	1.60186
SRR768129	whole fruit	no	35 days post anthesis	5.6542
SRR768130	whole fruit	no	60 days post anthesis	0.315993
SRR768131	whole fruit	no	87 days post anthesis	0.158567
SRR7343308	immature fruit flesh	no	immature	0.280637
SRR7343309	immature fruit flesh	no	immature	0.280007
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	116.52
SRR1613974	Central seeds	no	20DAPF	93.4848
SRR1613975	Central seeds	no	20DAPF	86.0119
SRR1613976	Lateral seeds	no	20DAPF	84.5291
SRR1613977	Lateral seeds	no	20DAPF	77.5377
SRR1613978	Lateral seeds	no	20DAPF	80.0385
SRR3744786	stem	no	mature	0.0654157
SRR3744787	stem	no	mature	0.0215703
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.0376606
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.202043
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0.0708926
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.268436
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.844844
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0.289269
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0