Gene detail

Detail information of MD01G1199700 Annotation

Gene ID	Annotation
MD01G1199700	Transducin/WD40 repeat-like superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0618	isovaleryl-CoA dehydrogenase [EC:1.3.8.4] NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] inositol oxygenase [EC:1.13.99.1] E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27] isovaleryl-CoA dehydrogenase activity inositol oxygenase activity regulation of protein homodimerization activity inositol catabolic process leucine catabolic process alanine-tRNA ligase activity alanyl-tRNA aminoacylation regulation of photomorphogenesis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1199700	mRNA	Chr01	29682612	29683823	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP030690.1	1	-
Pyrus x bretschneideri	Pbr031302.1	1	-
Rosa multiflora	Rmu_ssc0000155.1_g000016.1	1	-
Rubus occidentalis	Ro07_G09448	1	-
Solanum lycopersicum	Solyc11g005190.1.1	1	Transducin/WD40 repeat-like superfamily protein
Populus trichocarpa	Potri.015G143200.1	1	Transducin/WD40 repeat-like superfamily protein
Nicotiana benthamiana	Niben101Scf05668g01001.1	1	nucleotide binding protein [Arabidopsis lyrata subsp. lyrata] gb\|EFH48330.1\| nucleotide binding protein [Arabidopsis lyrata subsp. lyrata]
Oryza sativa	LOC_Os02g02380.1	1	"suppressor of phythchrome A, putative"
Zea mays	GRMZM2G389155_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K10143	E3 ubiquitin-protein ligase RFWD2	EC:2.3.2.27

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	13.3585
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0.158941
SRR5252879	bud break	no	bud break	0.176249
SRR3744766	flower	no	mature	16.8416
SRR3744767	flower	no	mature	16.8079
SRR3744768	flower	no	mature	18.0796
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0.325811
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.556032
SRR6308194	sepals	no	open flowers	0.404226
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.374257
SRR3384921	fruit	no	2 week after full bloom	0.162044
SRR3384920	fruit	no	3 week after full bloom	0.642071
SRR3384919	fruit	no	4 week after full bloom	0.52727
SRR3384923	fruit	no	5 week after full bloom	0.376072
SRR3384918	fruit	no	6 week after full bloom	0.209323
SRR3384917	fruit	no	8 week after full bloom	0.604417
SRR3384916	fruit	no	10 week after full bloom	0.392594
SRR3384915	fruit	no	12 week after full bloom	0.61935
SRR3384914	fruit	no	14 week after full bloom	0.375426
SRR3384913	fruit	no	16 week after full bloom	0.442189
SRR3384912	fruit	no	18 week after full bloom	0.414971
SRR3384911	fruit	no	19 week after full bloom	0.796012
SRR3384910	fruit	no	20 week after full bloom	0.124651
SRR768128	whole fruit	no	25 days post anthesis	0.0899278
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0.44252
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0.363577
SRR7403504	fruit	uninfected	mature	0.124518
SRR7403506	fruit	uninfected	mature	0.131535
SRR7403507	fruit	uninfected	mature	0.156176
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.489911
SRR1613974	Central seeds	no	20DAPF	0.367179
SRR1613975	Central seeds	no	20DAPF	0.456961
SRR1613976	Lateral seeds	no	20DAPF	0.458815
SRR1613977	Lateral seeds	no	20DAPF	0.380283
SRR1613978	Lateral seeds	no	20DAPF	0.252279
SRR3744786	stem	no	mature	23.1984
SRR3744787	stem	no	mature	24.5093
SRR3744772	stem	no	mature	24.8902
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.84861
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.18293
SRR1089478	leaf	Virus-free	plantlets	2.29486
SRR1089477	leaf	ASGV-infected	plantlets	5.00653
SRR767660	leaf	uninfected	fully developed	5.23507
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	31.4288
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	11.6287
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	7.51527
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.69904
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.876894
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	23.7365
SRR6308182	young leaf	no	immature leaves	2.52597
SRR3744769	leaf	no	mature	63.2554
SRR3744770	leaf	no	mature	63.96
SRR3744771	leaf	no	mature	61.9264
SRR5405145	leaf	no	mature	10.2331
SRR6320561	leaf	no	mature	19.8711