Gene detail

Detail information of MD01G1208700 Annotation

Gene ID	Annotation
MD01G1208700	heat shock protein 90.1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0052	response to hydrogen peroxide response to high light intensity protein folding response to heat response to endoplasmic reticulum stress heat acclimation cytoplasm protein unfolding ATPase activator activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1208700	mRNA	Chr01	30315406	30318680	+

Sequences

CDS:

MD01G1208700

GAGAAAAGAGTAGAAGCATCCAGAACCAGAGTCCTCTTCCTTATAAGAGCCTCCTCAGTCCCTCCCCCAACCATCAGACAATCGCAATCGTCAATCTCTTTCTTGCTTTCTTTCAATCGCGACGCTTCGAATTTTCTCGCAAACAAGCTCGAATTTTCTCTCGCTTTCTTGCATTTTCTCGGAAAACTTGATCGATGGCCGACGTTCAGATGCACGACGCTGAGACCTTCGCCTTCCAGGCCGAGATCAACCAGCTTCTGAGCTTGATCATCAACACTTTCTACAGCAACAAGGAGATCTTCCTTCGTGAGCTCATCAGCAATTCATCTGATGCTTTGGACAAAATTCGTTTCGAGAGCCTCACAGACAAAAGCAAGCTCGATGCTCAGCCGGAGCTTTTTATCAGGCTGGTGCCTGACAAGGCTAACAAGACCCTCTCAATCATTGACAGTGGCATCGGCATGACCAAAGCAGATTTGGTGAACAACTTGGGTACAATTGCAAGGTCTGGAACCAAAGAATTCATGGAGGCATTGCAAGCCGGAGCCGATGTGAGCATGATTGGTCAGTTTGGTGTCGGTTTCTACTCGGCCTATCTCGTTGCTGAGAAGGTCATTGTGACCACCAAGCACAATGACGACGAGCAGTACATCTGGGAGTCACAGGCTGGTGGTTCCTTCACTGTCACAAGGGATGTCAATGGCGAACCGCTCGGCAGGGGCACCAAGATCACCCTCTTCCTCAAGGAGGATCAGTTGGAGTATTTGGAAGAGAGGAGGGTCAAGGATCTTGTGAAGAAGCACTCTGAGTTCATCAGCTATCCAATCTATCTCTGGACCGAGAAGACTACCGAGAAGGAGATCAGTGACGACGAAGACGAAGATACCAAGAAGGAAGAGGAAGGAGATGTTGAGGAGGTTGATGAGGACAAGGAGAAGACATCAAAGAAGAAGAAGATCAAGGAGGTTTCTCACGAGTGGCAGCTCATCAACAAGCAGAAACCCATCTGGCTCCGAAAGCCCGAAGAAATCACCAAGGAGGAGTACGCTGCCTTCTACAAGAGCTTGACCAATGACTGGGAGGAGCACCTTGCTGTCAAGCATTTCTCAGTCGAAGGCCAGCTCGAATTCAAGGCCATCCTCTTCGTCCCGAAGAGGGCTCCTTTCGATCTTTTCGACACTAGGAAGAAGATGAACAACATCAAGCTCTATGTCAGGAGGGTGTTCATCATGGACAATTGCGAGGAGCTGATTCCGGAGTACCTCGGATTCGTGAAGGGTGTCGTCGATTCGGATGATTTGCCTCTCAACATCTCTCGTGAGACGCTGCAACAGAACAAGATTTTGAAGGTGATCAGGAAGAACCTTGTGAAGAAATGTATTGAGATGTTCAATGAGATTACTGAGAACAAAGAGGATTACGCCAAGTTCTACGAAGCCTTCTCCAAGAATTTGAAATTGGGCATCCATGAGGACAGCCAGAACAGAGCCAAATTGGCCGATCTCCTCCGCTACCACTCGACCAAGAGCGGTGACGAGGTGACAAGCCTGAAGGACTACGTGACCAGAATGAAGGAGGGTCAGAAGGACATTTACTACATCACCGGAGAATCGAAGAAGGCGGTGGAGAACTCTCCGTTCTTGGAGCGCCTGAAGAAGAAGGGCTACGAAGTTCTTTACATGGTGGATGCCATTGACGAATATGCCGTCGGACAATTGAAGGAATACGACGGCAAGAAGCTGGTGTCCGCCACCAAGGAGGGTCTCAAACTCGATGACGAGACAGAGGAAGAGAAGAAGGCAAAAGAGGAGAAGAAGAAGTCATTTGAGAACCTCTGCAAGACAATGAAGGACATTCTGGGAGACAGGGTCGAGAAGGTGGTGGTTTCCGACAGGATTGTCGACTCGCCCTGCTGCTTGGTGACCGGAGAATACGGGTGGACGGCCAACATGGAGAGGATCATGAAGGCGCAGGCGCTGCGGGACAACAGCATGAGCTCCTACATGTCGAGCAAGAAGACGATGGAGATCAACCCGGACAACGGAATCATGGAGGAGCTGAGGAAGAGGGCGGAGGCTGACAAGAATGACAAATCCGTGAAGGACCTCGTGCTGCTGCTGTTCGAGACTGCTCTGCTGACCTCCGGCTTCAGCCTGGATGACCCCAACACTTTCGCGGCGAGAATTCACCGGATGTTGAAGCTGGGGCTGAGCATTGAGGAGGAGGAGATCGGCGGCGATGATACTGACATGCCTGCTCTGGAGGAGGACGGTGCTGAGGAGAGCAAGATGGAGGAGGTGGACTAAGCCAGTTTCTGCGTTTTGGAGTCAATTGGGATGTCATTTGAGTTTGTGGATATTTCGGGTATTTTGGTTTACCTAATTGTTGGTAGGTGTCGCGGTCTTATTGGATGAAAGTTGTCCCCGTGGTGTGTCAATCTTGTAGTGTCTTTTAATTTTGTGTTGTCAGTTTTCAGTCCGTGTCAAAACTTGATGGTGGTTAATTCTGAAACTCGATAATGTTAATATAATTTTGAGTTTCTCATA

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G52640.1	1	ATHS83;ATHSP90.1;AtHsp90-1;HSP81.1;HSP81-1;HSP83;HSP90.1\|HEAT SHOCK PROTEIN 90-1;heat shock protein 90.1;HEAT SHOCK PROTEIN 81-1;HEAT SHOCK PROTEIN 83
Prunus persica	Prupe.2G301300.1.p	1	heat shock protein 90.1
Pyrus communis	PCP018844.1	1	-
Pyrus x bretschneideri	Pbr021565.1	1	-
Pyrus x bretschneideri	Pbr021522.1	1	-
Rosa multiflora	Rmu_sc0001289.1_g000016.1	1	-
Rubus occidentalis	Ro07_G14010	1	-
Fragaria vesca	mrna13191.1	1	heat shock protein 90.1
Solanum lycopersicum	Solyc03g007890.2.1	1	heat shock protein 90.1
Populus trichocarpa	Potri.004G073600.1	1	heat shock protein 90.1
Populus trichocarpa	Potri.017G146600.1	0.768	heat shock protein 90.1
Nicotiana benthamiana	Niben101Scf03114g03011.1	1	Chaperone protein HtpG
Oryza sativa	LOC_Os04g01740.1	1	"heat shock protein, putative, expressed"
Zea mays	GRMZM5G833699_P01	1	protein_coding

Gene Ontology

GO term	Description	Category
GO:0006457	protein folding	biological_process
GO:0051082	unfolded protein binding	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006950	response to stress	biological_process

KEGG

KO	Description	Enzyme
K04079	molecular chaperone HtpG	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02518.22	HATPase_c	32	185	1.20E-17

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	116.354
SRR5252888	dormant buds	no	dormant buds(0 month)	1.89837
SRR5252889	dormant buds	no	dormant buds(0 month)	2.49238
SRR5252886	dormant buds	no	dormant buds(1 months)	1.52729
SRR5252887	dormant buds	no	dormant buds(1 months)	3.24641
SRR5252884	dormant buds	no	dormant buds(2 months)	0.886826
SRR5252882	dormant buds	no	dormant buds(3 months)	0.957856
SRR5252883	dormant buds	no	dormant buds(3 months)	1.71473
SRR5252880	dormant buds	no	dormant buds(4 months)	1.9119
SRR5252881	dormant buds	no	dormant buds(4 months)	2.38739
SRR5252878	bud break	no	bud break	41.2146
SRR5252879	bud break	no	bud break	30.9585
SRR3744766	flower	no	mature	17.4369
SRR3744767	flower	no	mature	18.3466
SRR3744768	flower	no	mature	18.1289
SRR6308190	stigmas	no	open flowers	12.6357
SRR6308181	styles	no	open flowers	15.6359
SRR6308188	filaments	no	open flowers	26.2599
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	7.07719
SRR6308192	pollen	no	open flowers	26.909
SRR6308191	petals	no	open flowers	113.759
SRR6308194	sepals	no	open flowers	163.862
SRR6308193	receptacles	no	open flowers	77.8844
SRR6308189	ovaries	no	open flowers	15.3751
SRR3384922	fruit	no	1 week after full bloom	4.64341
SRR3384921	fruit	no	2 week after full bloom	20.7634
SRR3384920	fruit	no	3 week after full bloom	998.826
SRR3384919	fruit	no	4 week after full bloom	15.1985
SRR3384923	fruit	no	5 week after full bloom	50.1454
SRR3384918	fruit	no	6 week after full bloom	157.407
SRR3384917	fruit	no	8 week after full bloom	66.112
SRR3384916	fruit	no	10 week after full bloom	225.658
SRR3384915	fruit	no	12 week after full bloom	592.684
SRR3384914	fruit	no	14 week after full bloom	462.804
SRR3384913	fruit	no	16 week after full bloom	98.5632
SRR3384912	fruit	no	18 week after full bloom	318.11
SRR3384911	fruit	no	19 week after full bloom	2.34984
SRR3384910	fruit	no	20 week after full bloom	42.9834
SRR768128	whole fruit	no	25 days post anthesis	866.408
SRR768129	whole fruit	no	35 days post anthesis	6.78392
SRR768130	whole fruit	no	60 days post anthesis	203.308
SRR768131	whole fruit	no	87 days post anthesis	17.711
SRR7343308	immature fruit flesh	no	immature	5.67186
SRR7343309	immature fruit flesh	no	immature	5.6571
SRR6320494	ripe fruit flesh	no	mature	20.5229
SRR5405143	ripe fruit peel	no	mature	28.9559
SRR6320572	ripe fruit peel	no	mature	78.3364
SRR7403504	fruit	uninfected	mature	8.1358
SRR7403506	fruit	uninfected	mature	9.15846
SRR7403507	fruit	uninfected	mature	9.60138
SRR7403500	fruit	infected with penicillium expansum	mature	5.61344
SRR7403501	fruit	infected with penicillium expansum	mature	5.18931
SRR7403508	fruit	infected with penicillium expansum	mature	5.66062
SRR7403502	fruit	infected with penicillium expansum	mature	42.5851
SRR7403503	fruit	infected with penicillium expansum	mature	48.2018
SRR7403505	fruit	infected with penicillium expansum	mature	45.5818
SRR1613973	Central seeds	no	20DAPF	0.230029
SRR1613974	Central seeds	no	20DAPF	0.204129
SRR1613975	Central seeds	no	20DAPF	0.295017
SRR1613976	Lateral seeds	no	20DAPF	23.4432
SRR1613977	Lateral seeds	no	20DAPF	10.688
SRR1613978	Lateral seeds	no	20DAPF	12.6707
SRR3744786	stem	no	mature	2.54178
SRR3744787	stem	no	mature	2.6869
SRR3744772	stem	no	mature	2.46379
SRX765691	seedling shoot apex	no	4-6 week old seedling	16.1308
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	424.362
SRR1089478	leaf	Virus-free	plantlets	936.735
SRR1089477	leaf	ASGV-infected	plantlets	384.355
SRR767660	leaf	uninfected	fully developed	4.88663
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.18222
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.61839
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	11.012
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	9.96538
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.17968
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.07659
SRR6308182	young leaf	no	immature leaves	0.117674
SRR3744769	leaf	no	mature	0.583071
SRR3744770	leaf	no	mature	1.30213
SRR3744771	leaf	no	mature	1.12656
SRR5405145	leaf	no	mature	0.987472
SRR6320561	leaf	no	mature	1.54087