Gene detail

Detail information of MD01G1228200 Annotation

Gene ID	Annotation
MD01G1228200	pseudo-response regulator 5

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1228200	mRNA	Chr01	31807561	31811443	+

Sequences

CDS:

MD01G1228200

CTCTCCAGCATCACTGAAACATTGCGTAGCTCTGTTTCCTCCGGTGGGTGCAAATAGAAATTTAGAGAGAAATGGGCGAGGTGGGTATCAATAGGGAGGACGTGGAAGCGAAGCTGAGAGTAGAGGCGGAGAAGAAGGACGGCGGCGAGTGCGACTCTTCCGTCGGGACGATGCGGTGGGAGAAGCTGCTGCCGACGATGAACATGCGGGTGTTGCTGGTGGAAGCTGATGACTCCACCAGGCATATTATAGCTGCGCTTCTCAGGAAATGTAGCTACAGAGTTGCTGCTGTAGCTGATGGCTTAAACGCTTGGGAGATACTGAAGGCAAGGCCTCATAACATAGACCTGATACTGACAGAGGTCGATCTGCCATCGATATCTGGATTTGCTTTGCTTACGCTAATCATGGAGCACGAGATCTGCAAAAATATTCCTGTTATAATGATGTCCTCTCAGGATTCAATTAGCACCGTTTACAAATGCATGACGAGAGGCGTTTCTGACTATCTAGTCAAGCCTATTAGGAAGAATGAGCTGACAAATCTATGGCAGCATGTTTGGAGAAGACAATCTTTAGCCCGGAATGGCCCCCTCAATGAGAGTGTTGGACAACAAAAGATCAAAGCCACTTGTGAAAACGATGGTGCAAGCAATCATTCAAGTGGCTATATGGCACGTGTTAACGAAAACATGGGAAAAGGGACTGATTCTCAGAGCTCTTGTACAAAGCCAGACTTCGAAACTGAGAATGCCCCTGTAGATATGCAAATTCGGGGAAAAACGAAGAAAGATGAAGCACACGCCACTTTTGGAGAGAAATTTCTTACGCATGGAAATGCAGCTAGAGGAACAACTAAGACTGCCGATGAAATCACTGACACAGCAGTTTCACCAGGCAAGGGTGCCAAGGCAGAAAGTCAGAGGAGGGATGATAATATGACTAGTGAAGCTTGTGACAATAACGATCTACTTGTCAACTCTTGTAGAGATATTACTGACTTCATTGGAGCATTCAGTAAATATCCAAGTAGCAACCAGAGAAATTCTTTTTCAAGTAATGCACCTAGCATGTTTGATTCTGCTCCACAATTGGATCTGTCCTTGAGAAGACCCGACTCCAGTGGCTTTGAGAATCGAGTTACTGAGAAAAGGCACACCCTTGGCCACTCTGATGCTTCCGCCTTTTCAAGATACATCAACAAGCCAATGCAGCCCCAGAAAACTTCACTGTGTGATCAGCAAAAGGCATACGAAACTACGTGCGAGAAGCAAACATCTAATACCAATGCTGATTGTGATACTCCTGCTACAACTTTTAGTACTCCCAGGAGTATTATTACTCTAGCTACTGGTCAATCTAACCAATCCGAAGTTGGAATGGCATGCCCTGAGCAGAGACTATTTCCTCTTCCAGTTCCCGTGAAAGGCATAAGGGTTAACAATCTAAGCAATGGGTATGGTACGGTACTGCCTCCAATGTTTTGTGCACAATCAAGTCCATCACCAATTGCTAGTTCAGCTGCCCAGCAGGAACCCTCATTCCTGATGAATACATTTTACCCCGCAAATCTTCAAACAGATAAATCTGAGAAAGTATACGGCACACTTTATCAAAATGCCAAAGTTACAATGGACCAAGCTCAGAATCAGGATCAGAGATTCAATGAGGATCGAGGGCATATGTCCTCAGCAACCGATCAAAGTGCAAGTAGCAGTTTCTGTAATGGCAATACAGGTCATCTCAGTAGCATGGGGTATGGAAGTGCTTGTGGAAGCAACAATGTTGATCAGGTGGCTATGTTCAGGGCTGCTCCAGAGCACAAGAATGAAGACAGTTTCTTTAATCAAAACGGAAATTCTCATCGATCCATCCAAAGAGAAGCAGCTCTAAACAAGTTCCGCTTGAAGCGCAAAGATAGATGCTACGACAAGAAGGTTCGCTACGAGAGCAGAAAGAAACTCGCAGAGCAGCGTCCCAGAATAAAAGGGCAGTTTGTTCGTCAAGCAAGTAATGATCCTTCACCTGCAGAAACTGATGGCAATACATATGAGGGTTAACTACTTATAGAGTTTCTTGTACTTCAAGTTAAGATGGCGGATGGGTAAGAGTATATAGCTTTGTTATACCGTTTTTCAGTTTTTGATGCCAAGAAACACAGGTGAGGAGAATAGTACAGGCCTGAAGAAGCTTCTGACATCACTTCTGCATTCATCTTTCACGTATATATGTATCAACTCGTTTTACCAATGTATCCTCTGTAAAATGGGGTTGTATATTTTTCTTCCTAGGGATGTTTTAGTCATTGTATTTTTGTTTGTTATCACATAGGTTTGTTCATTCAAGATTTCAAATCTCAGTGGGTATACAAACTTCATTTGATCACTGCTTGTGTTATTATCACCAACAAAATATTTTGAATGAACCCCATTAGGTATTATTAGGTATAAGTTGTATATTAACGACGTT

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	Pseudo ARR-B

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G24470.1	1	APRR5;PRR5\|pseudo-response regulator 5
Pyrus communis	PCP014688.1	1	-
Pyrus x bretschneideri	Pbr013518.1	1	-
Fragaria vesca	mrna12454.1	1	pseudo-response regulator 5
Vitis vinifera	GSVIVT01038647001	1	pseudo-response regulator 5
Solanum lycopersicum	Solyc03g081240.2.1	1	pseudo-response regulator 5
Populus trichocarpa	Potri.012G005900.2	1	pseudo-response regulator 5
Nicotiana benthamiana	Niben101Scf01109g04021.1	1	response regulator 12 LENGTH=596
Nicotiana benthamiana	Niben101Scf00225g05002.1	0.691	Hybrid signal transduction protein dokA
Oryza sativa	LOC_Os09g36220.1	1	"response regulator receiver domain containing protein, expressed"
Oryza sativa	LOC_Os11g05930.2	1	"response regulator receiver domain containing protein, expressed"

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function
GO:0000160	phosphorelay signal transduction system	biological_process
GO:0000156	phosphorelay response regulator activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.20	Response_reg	47	158	2.30E-21

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.9785
SRR5252888	dormant buds	no	dormant buds(0 month)	70.479
SRR5252889	dormant buds	no	dormant buds(0 month)	60.5712
SRR5252886	dormant buds	no	dormant buds(1 months)	65.0066
SRR5252887	dormant buds	no	dormant buds(1 months)	67.3664
SRR5252884	dormant buds	no	dormant buds(2 months)	133.334
SRR5252882	dormant buds	no	dormant buds(3 months)	103.231
SRR5252883	dormant buds	no	dormant buds(3 months)	87.9318
SRR5252880	dormant buds	no	dormant buds(4 months)	58.9625
SRR5252881	dormant buds	no	dormant buds(4 months)	56.0797
SRR5252878	bud break	no	bud break	15.403
SRR5252879	bud break	no	bud break	6.27837
SRR3744766	flower	no	mature	10.1512
SRR3744767	flower	no	mature	10.7301
SRR3744768	flower	no	mature	10.2676
SRR6308190	stigmas	no	open flowers	1.86605
SRR6308181	styles	no	open flowers	0.924983
SRR6308188	filaments	no	open flowers	0.291913
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.5252
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	3.43485
SRR6308194	sepals	no	open flowers	2.05763
SRR6308193	receptacles	no	open flowers	0.965372
SRR6308189	ovaries	no	open flowers	0.588647
SRR3384922	fruit	no	1 week after full bloom	7.58385
SRR3384921	fruit	no	2 week after full bloom	1.3622
SRR3384920	fruit	no	3 week after full bloom	0.157821
SRR3384919	fruit	no	4 week after full bloom	1.19559
SRR3384923	fruit	no	5 week after full bloom	6.37826
SRR3384918	fruit	no	6 week after full bloom	0.246968
SRR3384917	fruit	no	8 week after full bloom	0.846825
SRR3384916	fruit	no	10 week after full bloom	1.44749
SRR3384915	fruit	no	12 week after full bloom	8.25502
SRR3384914	fruit	no	14 week after full bloom	0.298986
SRR3384913	fruit	no	16 week after full bloom	1.3695
SRR3384912	fruit	no	18 week after full bloom	0.99144
SRR3384911	fruit	no	19 week after full bloom	21.413
SRR3384910	fruit	no	20 week after full bloom	11.3059
SRR768128	whole fruit	no	25 days post anthesis	1.63693
SRR768129	whole fruit	no	35 days post anthesis	1.31531
SRR768130	whole fruit	no	60 days post anthesis	3.45488
SRR768131	whole fruit	no	87 days post anthesis	3.26448
SRR7343308	immature fruit flesh	no	immature	20.9213
SRR7343309	immature fruit flesh	no	immature	23.9877
SRR6320494	ripe fruit flesh	no	mature	15.2107
SRR5405143	ripe fruit peel	no	mature	9.47495
SRR6320572	ripe fruit peel	no	mature	4.74405
SRR7403504	fruit	uninfected	mature	18.4095
SRR7403506	fruit	uninfected	mature	19.4469
SRR7403507	fruit	uninfected	mature	17.7331
SRR7403500	fruit	infected with penicillium expansum	mature	9.1354
SRR7403501	fruit	infected with penicillium expansum	mature	8.0493
SRR7403508	fruit	infected with penicillium expansum	mature	8.39861
SRR7403502	fruit	infected with penicillium expansum	mature	12.8686
SRR7403503	fruit	infected with penicillium expansum	mature	12.0876
SRR7403505	fruit	infected with penicillium expansum	mature	13.1174
SRR1613973	Central seeds	no	20DAPF	6.34264
SRR1613974	Central seeds	no	20DAPF	7.73464
SRR1613975	Central seeds	no	20DAPF	7.20094
SRR1613976	Lateral seeds	no	20DAPF	11.4638
SRR1613977	Lateral seeds	no	20DAPF	10.3857
SRR1613978	Lateral seeds	no	20DAPF	11.1928
SRR3744786	stem	no	mature	13.738
SRR3744787	stem	no	mature	13.0776
SRR3744772	stem	no	mature	13.0734
SRX765691	seedling shoot apex	no	4-6 week old seedling	12.8523
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.74681
SRR1089478	leaf	Virus-free	plantlets	8.87315
SRR1089477	leaf	ASGV-infected	plantlets	11.884
SRR767660	leaf	uninfected	fully developed	33.2307
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	51.652
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	11.2344
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	28.4475
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	58.5487
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	42.8155
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	30.9597
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	31.051
SRR6308182	young leaf	no	immature leaves	5.96048
SRR3744769	leaf	no	mature	20.8027
SRR3744770	leaf	no	mature	20.0472
SRR3744771	leaf	no	mature	21.0466
SRR5405145	leaf	no	mature	60.4739
SRR6320561	leaf	no	mature	62.045