Gene detail

Detail information of MD01G1234500 Annotation

Gene ID	Annotation
MD01G1234500	exportin 1A

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0261	nucleotide biosynthetic process post-embryonic organ development leucine-tRNA ligase activity regulation of auxin polar transport leucyl-tRNA aminoacylation lateral root formation root meristem growth cytosol spermidine biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1234500	mRNA	Chr01	32212690	32223112	-

Sequences

CDS:

MD01G1234500

GCAAAACCCACACCAACCCTATCCATCCTCTACGATTACAAACTCAACCCCGAACCAACTCGTCACTCGCTCTATCACTCGTCCCGCTCTCCTGCTCTCCTACGCCACTACCACTTCTCTACTGCTTCATTTTCAAGCTGTCTTTATTTCCCTCCCCCCTTCTCTCTCTCTCTTCTTTTTCCCCTAATTAATATATAAATAAATACCCACACACCCTTTCGCTCCTTCCTCAGCACTATTCTCTTTTCTTCTCTCTCTAGAATCTTTTCTCTCTCCTAGGGTTTCGGTGGCTTCCGGTGTCTCTATTTCCTCCTATCCACACTGCTGTTGCGCTCTAGGGTTTATCGGCTTGGGTGTCTACGATCGTCCTTCCTTCTCTTTCTCCCCCTTTCTCGCTCAGTGGCTATGGCGGCTGAGAAGCTAAGGGACTTGAGCCAGCCGATTGACGTTGGCCTGCTCGATGCCACCGTCGCCGCCTTCTACGGCACCGGATCTAAGGAGGAGAGGACAGCTGCAGACCAGATATTGAGGGACTTGCAAAACAATCCTGATATGTGGCTCCAAGTTGTGCACATTTTACAGAGCGCAAAGAACCTAAACACCAAGTTCTTTGCCTTGCAGGTCTTAGAAGGGGTTATCAAGTACAGGTGGAATGCATTGCCTGTTGAACAGCGAGACGGAATGAAAAATTATATCTCTGATGTTATTGTACAGCTATCAAGTAATGAGGCCTCTTTTCGAATGGAAAGACTTTATGTCAGCAAACTCAATGTTATATTGGTTCAGATTTTAAAGCATGATTGGCCCACCAAATGGCGAAGCTTTATTCCGGATCTTGTATCAGCAGCTAAAACTAGTGAAACCATTTGTGAAAATTGTATGGCCATATTAAAGCTTCTAAGCGAAGAGGTTTTTGATTTCTCAAGGGGGGAAATGACACAGTTGAAGATTAAAGAGCTTAAACAATCATTGAACAGTGAGTTTCAACTCATTCATGAGTTATGCTTATATGTACTATCAGCCTCTCAACGAACTGAGCTGATACGTGCAACATTATCCACATTGCATGCTTTCCTCTCCTGGATTCCCCTGGGCTATATTTTTGAGTCCCCTTTGCTTGAAACCCTTCTGAAGTTTTTTCCCATGCCTTCATATCGGAATCTTACCCTTCAGTGTCTAACGGAGGTTGCAGCACTTACTTTCGGTGAATTCTATAATGCACAGTATGTTAAGATGTACAGTATATTCATGGTGCAGTTACAGACTATTCTCCCACCCACCACAAACATACCTGAAGCTTACACAAATGGATCTGGCGAGGAACAGGCATTCATTCAGAACTTGGCACTGTTTCTCACTTCGTTTTACAAGGCGCATATTCGTGTTCTTGAAACCACACAAGAGACTATAGCTGCATTGCTGATGGGTCTTGAATATCTTATAAACATCTCATATGTGGATGACACCGAAGTTTTTAAGGTTTGCTTAGACTATTGGAATGCTTTGGTTTTGGAACTGTTTGAGGCACATCATAATCTGGATAACCCTGCAGCATCTGCCAATATGATGGGGTTGCAGATGAATTTGCTTCCTAGTATGGTTGATGGCATTGGCTCACAACTTTTGCAAAGGCGGCAAATATATGTTGGTATTATGTCAAAGTTGAGGTTGCTCATGATCTGTCGTATGGCTAAGCCAGAAGAGGTTATCATTGTTGAAGATGAGAATGGCAACATTGTTCGTGAGACCTTGAAGGACAATGATGTTCTAGTTCAATATAAGATCATGAGGGAGACGCTGATATATTTGTCACATCTTGACCACGATGATACCGAGAAGCAGATGCTAAAGAAATTAAACAAACAACTGACTGGTGAGGATTGGGCATGGAACAACTTAAACACATTATGTTGGGCAATAGGGTCTATATCTGGTTCCATGATGGAAGAGCAGGAAAATAGATTTTTGGTGATGGTCATTCGTGACTTGCTGAACTTGTGTGAAATCATAAAAGGGAAAGATAATAAAGCAGTTATTGCAAGCAATATCATGTATGTTGTCGGACAGTACCCAAGGTTCTTAAGAGCTCATTGGAAGTTCCTAAAGACTGTTGTCAATAAGTTGTTTGAGTTTATGCACGAAACACATCCTGGAGTCCAGGACATGGCCTGTGACACATTCTTGAAAATTGTTCAAAAGTGCAAGCGTAAATTTGTTATTGTACAGGTTGGAGAAAATGAACCATTTGTGTCTGAACTCCTGACAAGCCTGCCGAATACTGTTGGCGATCTTCAGCCTCACCAGATTCATACTTTCTATGAAGCTGTTGGTCATATGATTCAAGCAGAGTCTGATCCCAAGAAGAGAGAAGAATATCTACAGAGATTGATGAGTCTCCCAAATCAGAAATGGGCCGAGATCATAGGGCAAGCACGCTTAAGTGTTGATTTCCTGAAGGATCAGGAGGTAATTCGGACCGTGCTTAATATATTACAGACAAATACTAGCGTTGCGAGCTCCCTTGGGACGTTTTTCCTGTCTCAGATCTCAATGATCTTTCTGGACATGCTTAATGTGTACAGGATGTACAGTGAGCTTGTATCTAGTAACATTGCGGAAGGGGGTCCCTTTGCTTCTAAAACATCCTATGTGAAACTTCTACGGTCGGTGAAGAGGGAGACTCTCAAGTTGATTGAGACATTCTTGGACAAGGCTGAAGACCAACCACAGATTGGAAAACAAATTGTGCCTCCCATGTTGGATCCAGTCCTAGGCGACTATGCTAGGAATTTGCCTGATGCTAGAGAGTCAGAGGTTTTGTCACTTTTTGCCACTATCATAAATAAGTACAAGGGTGCAATGATAGATGATGTGCCAAGAATATTTGAAGCTGTTTTCCAGTGCACATTGGAGATGATCACAAAAAATTTTGAAGATTACCCAGAGCATCGTTTGAAGTTCTTTTCTTTACTTCGTGCCATTGCTGCACACTGCTTTGCTGCATTGATTCGATTGTCGAGTCCGCAACTAAAGCTTGTCATGGATTCAATTATATGGGCGTTTCGGCACACCGAAAGAAATATTGCTGAAACTGGGCTGAACCTGTTGTTGGAAATGCTGAGAAACTTTCAGAAATCAGAGTTCTGTAATCAGTTTTACCGTACGTACTTTCTGACAATTGAGCAAGAAATATTTGCTGTCTTGACTGATACATTTCATAAACCTGGGTTCAAGTTGCATGTCTTGGTTCTCCAACATTTGTTCAGCCTGGTGGGAAGTGATCTGTTGAAGGAGCCTTTGTGGGATGTTGCAGCTGTTCCTTATCCATATCCTAATAATGGAATGTTTGTTCGTGAATATACAATAAAGCTTTTGAGTACTTCATTCCCAAACATGACTGGGACGGAGGTTACTCAATTTGTGAATGGACTATTTGAATCAACTGCTGACGTACCCACTTTTAAAAATCACATCCGAGACTTCCTAGTGCAATCCAAAGAATTTTCAGCACAGGACAACAAAGATCTTTATGCAGAGGAGGCTGCTGCTCAGAGAGAGAAAGATCGGCAACGAATGCTATCTATTCCTGGGCTTATTGCCCCCAATGAAATACAGGACGAAATGGTTGATTCCTAGGAGGCTAAGTTTAATGATGAAGCTAATTTTGAGGACAATTGATGGAGATGCAAATGGGCGTGTTGATTCAATCCTCAGATTCTTCCAGCGCAAATACAGCATTTTTTCCCTAATTAGTTTCCATTTTGTTTCTTAGTTCAAAATTAGTTGAATCGCAAAGGCGCCTTTAGTGTGCTGTTTGCACTGTTGCCTTCGAAGTCTATTGGGATATGGTTGTAGAGTATTTAGGTGCTGCTGATTTAGGGAGGAAGATATTGAGAAAGGTTTTGCTGGATCAAAATTAATCTTTTGTAGTTCGAACTCGCCAGGCGGGGTTCTTTAAAAGACATTTATGTTATTTGTCTTAGGTGTAATATACACTAACCTCGCTGTGCTGTGCAGAAGTTCCTCATATTTTTTGTTTGTTTGTTCTAGTTTTCAATAGAACGTGGCTGCCTCGTCGATTTCATGAGGTTTAGCGTAGATATTTTTGTTACATGTTAAGGAGTGAAATCTGTGTAATTCGATTGTGTTTAA

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G17020.1	1	ATCRM1;ATXPO1;HIT2;XPO1;XPO1A\|ARABIDOPSIS THALIANA EXPORTIN 1;HEAT-INTOLERANT 2;EXPORTIN 1;exportin 1A
Arabidopsis thaliana	AT5G17020.2	0.852	ATCRM1;ATXPO1;HIT2;XPO1;XPO1A\|ARABIDOPSIS THALIANA EXPORTIN 1;HEAT-INTOLERANT 2;EXPORTIN 1;exportin 1A
Prunus persica	Prupe.2G324800.2.p	1	exportin 1A
Prunus persica	Prupe.2G324800.1.p	0.947	exportin 1A
Rosa multiflora	Rmu_sc0005139.1_g000024.1	1	-
Rubus occidentalis	Ro07_G08976	1	-
Fragaria vesca	mrna12590.1	1	exportin 1A
Vitis vinifera	GSVIVT01024418001	1	exportin 1A
Populus trichocarpa	Potri.013G088600.1	1	exportin 1A
Populus trichocarpa	Potri.019G052100.1	0.62	exportin 1A
Nicotiana benthamiana	Niben101Scf03341g02012.1	1	exportin 1A LENGTH=1075
Zea mays	GRMZM2G022258_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0006886	intracellular protein transport	biological_process
GO:0008536	Ran GTPase binding	molecular_function

KEGG

KO	Description	Enzyme
K14290	exportin-1	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03810.15	IBN_N	37	103	1.70E-13
PF08767.7	CRM1_C	713	1034	1.50E-126

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	15.556
SRR5252888	dormant buds	no	dormant buds(0 month)	34.2859
SRR5252889	dormant buds	no	dormant buds(0 month)	31.6011
SRR5252886	dormant buds	no	dormant buds(1 months)	38.1271
SRR5252887	dormant buds	no	dormant buds(1 months)	33.6921
SRR5252884	dormant buds	no	dormant buds(2 months)	38.6178
SRR5252882	dormant buds	no	dormant buds(3 months)	35.4499
SRR5252883	dormant buds	no	dormant buds(3 months)	36.7304
SRR5252880	dormant buds	no	dormant buds(4 months)	39.5439
SRR5252881	dormant buds	no	dormant buds(4 months)	35.3201
SRR5252878	bud break	no	bud break	56.5431
SRR5252879	bud break	no	bud break	53.0094
SRR3744766	flower	no	mature	14.0873
SRR3744767	flower	no	mature	15.5642
SRR3744768	flower	no	mature	15.036
SRR6308190	stigmas	no	open flowers	9.0121
SRR6308181	styles	no	open flowers	11.2693
SRR6308188	filaments	no	open flowers	9.14795
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	7.12191
SRR6308192	pollen	no	open flowers	2.21381
SRR6308191	petals	no	open flowers	10.1727
SRR6308194	sepals	no	open flowers	12.0512
SRR6308193	receptacles	no	open flowers	12.7797
SRR6308189	ovaries	no	open flowers	11.862
SRR3384922	fruit	no	1 week after full bloom	6.29535
SRR3384921	fruit	no	2 week after full bloom	6.50645
SRR3384920	fruit	no	3 week after full bloom	8.1327
SRR3384919	fruit	no	4 week after full bloom	7.02922
SRR3384923	fruit	no	5 week after full bloom	6.81176
SRR3384918	fruit	no	6 week after full bloom	5.85067
SRR3384917	fruit	no	8 week after full bloom	5.30799
SRR3384916	fruit	no	10 week after full bloom	7.27676
SRR3384915	fruit	no	12 week after full bloom	8.59018
SRR3384914	fruit	no	14 week after full bloom	7.5704
SRR3384913	fruit	no	16 week after full bloom	6.049
SRR3384912	fruit	no	18 week after full bloom	8.80935
SRR3384911	fruit	no	19 week after full bloom	5.18245
SRR3384910	fruit	no	20 week after full bloom	10.0574
SRR768128	whole fruit	no	25 days post anthesis	17.2336
SRR768129	whole fruit	no	35 days post anthesis	5.17738
SRR768130	whole fruit	no	60 days post anthesis	6.53134
SRR768131	whole fruit	no	87 days post anthesis	9.92754
SRR7343308	immature fruit flesh	no	immature	21.2612
SRR7343309	immature fruit flesh	no	immature	16.1785
SRR6320494	ripe fruit flesh	no	mature	9.37701
SRR5405143	ripe fruit peel	no	mature	14.9975
SRR6320572	ripe fruit peel	no	mature	10.0801
SRR7403504	fruit	uninfected	mature	9.22029
SRR7403506	fruit	uninfected	mature	8.62549
SRR7403507	fruit	uninfected	mature	9.83113
SRR7403500	fruit	infected with penicillium expansum	mature	8.5342
SRR7403501	fruit	infected with penicillium expansum	mature	8.98253
SRR7403508	fruit	infected with penicillium expansum	mature	8.80892
SRR7403502	fruit	infected with penicillium expansum	mature	9.71973
SRR7403503	fruit	infected with penicillium expansum	mature	9.2693
SRR7403505	fruit	infected with penicillium expansum	mature	9.19235
SRR1613973	Central seeds	no	20DAPF	13.8219
SRR1613974	Central seeds	no	20DAPF	15.4021
SRR1613975	Central seeds	no	20DAPF	10.9141
SRR1613976	Lateral seeds	no	20DAPF	12.1747
SRR1613977	Lateral seeds	no	20DAPF	9.91335
SRR1613978	Lateral seeds	no	20DAPF	13.3482
SRR3744786	stem	no	mature	18.3385
SRR3744787	stem	no	mature	19.2017
SRR3744772	stem	no	mature	20.9848
SRX765691	seedling shoot apex	no	4-6 week old seedling	24.9105
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	26.2134
SRR1089478	leaf	Virus-free	plantlets	14.6496
SRR1089477	leaf	ASGV-infected	plantlets	12.3863
SRR767660	leaf	uninfected	fully developed	5.57629
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.2428
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	6.67973
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.88075
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.2326
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.72707
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.412
SRR6308182	young leaf	no	immature leaves	19.7472
SRR3744769	leaf	no	mature	17.8597
SRR3744770	leaf	no	mature	19.4531
SRR3744771	leaf	no	mature	20.2016
SRR5405145	leaf	no	mature	14.9537
SRR6320561	leaf	no	mature	13.4917