Gene detail

Detail information of MD01G1235700 Annotation

Gene ID	Annotation
MD01G1235700	Transcription factor DP

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1235700	mRNA	Chr01	32302179	32306348	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	E2F-DP

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G03415.1	1	ATDPB;DPB\|Transcription factor DP
Arabidopsis thaliana	AT5G03415.2	0.945	ATDPB;DPB\|Transcription factor DP
Pyrus x bretschneideri	Pbr013450.2	1	-
Rosa multiflora	Rmu_sc0005139.1_g000007.1	1	-
Rubus occidentalis	Ro07_G08967	1	-
Fragaria vesca	mrna12582.1	1	Transcription factor DP
Vitis vinifera	GSVIVT01025739001	1	Transcription factor DP
Populus trichocarpa	Potri.006G124200.1	1	Transcription factor DP
Populus trichocarpa	Potri.016G093200.1	0.663	Transcription factor DP
Nicotiana benthamiana	Niben101Scf00801g04021.1	1	Transcription factor DP LENGTH=385
Nicotiana benthamiana	Niben101Scf07370g01009.1	0.764	Transcription factor DP LENGTH=385
Oryza sativa	LOC_Os03g05760.1	1	"transcription factor Dp, putative, expressed"
Oryza sativa	LOC_Os01g48700.1	1	"transcription factor Dp, putative, expressed"
Zea mays	GRMZM2G063387_P01	1	-
Zea mays	GRMZM2G086072_P01	0.799	Transcription factor Dp-1

Gene Ontology

GO term	Description	Category
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0005667	transcription factor complex	cellular component

KEGG

KO	Description	Enzyme
K04683	transcription factor Dp-1	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02319.16	E2F_TDP	91	171	1.10E-21
PF08781.6	DP	179	292	4.60E-44

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.77204
SRR5252888	dormant buds	no	dormant buds(0 month)	14.3893
SRR5252889	dormant buds	no	dormant buds(0 month)	10.2148
SRR5252886	dormant buds	no	dormant buds(1 months)	14.4014
SRR5252887	dormant buds	no	dormant buds(1 months)	10.7926
SRR5252884	dormant buds	no	dormant buds(2 months)	17.5492
SRR5252882	dormant buds	no	dormant buds(3 months)	14.9817
SRR5252883	dormant buds	no	dormant buds(3 months)	14.6127
SRR5252880	dormant buds	no	dormant buds(4 months)	17.3567
SRR5252881	dormant buds	no	dormant buds(4 months)	12.9402
SRR5252878	bud break	no	bud break	18.1209
SRR5252879	bud break	no	bud break	9.93158
SRR3744766	flower	no	mature	9.06215
SRR3744767	flower	no	mature	8.90462
SRR3744768	flower	no	mature	9.23287
SRR6308190	stigmas	no	open flowers	6.91233
SRR6308181	styles	no	open flowers	6.23218
SRR6308188	filaments	no	open flowers	5.59272
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	5.88209
SRR6308192	pollen	no	open flowers	6.94242
SRR6308191	petals	no	open flowers	3.86137
SRR6308194	sepals	no	open flowers	4.72234
SRR6308193	receptacles	no	open flowers	6.11111
SRR6308189	ovaries	no	open flowers	7.73878
SRR3384922	fruit	no	1 week after full bloom	5.8848
SRR3384921	fruit	no	2 week after full bloom	6.52918
SRR3384920	fruit	no	3 week after full bloom	5.18817
SRR3384919	fruit	no	4 week after full bloom	6.60671
SRR3384923	fruit	no	5 week after full bloom	5.66695
SRR3384918	fruit	no	6 week after full bloom	7.72561
SRR3384917	fruit	no	8 week after full bloom	6.73188
SRR3384916	fruit	no	10 week after full bloom	7.71641
SRR3384915	fruit	no	12 week after full bloom	8.47059
SRR3384914	fruit	no	14 week after full bloom	7.57575
SRR3384913	fruit	no	16 week after full bloom	7.0109
SRR3384912	fruit	no	18 week after full bloom	9.56999
SRR3384911	fruit	no	19 week after full bloom	7.56203
SRR3384910	fruit	no	20 week after full bloom	8.90171
SRR768128	whole fruit	no	25 days post anthesis	5.13676
SRR768129	whole fruit	no	35 days post anthesis	6.80801
SRR768130	whole fruit	no	60 days post anthesis	6.84856
SRR768131	whole fruit	no	87 days post anthesis	6.13687
SRR7343308	immature fruit flesh	no	immature	8.11112
SRR7343309	immature fruit flesh	no	immature	10.1165
SRR6320494	ripe fruit flesh	no	mature	13.5885
SRR5405143	ripe fruit peel	no	mature	8.56692
SRR6320572	ripe fruit peel	no	mature	18.7734
SRR7403504	fruit	uninfected	mature	8.03431
SRR7403506	fruit	uninfected	mature	8.63093
SRR7403507	fruit	uninfected	mature	9.6329
SRR7403500	fruit	infected with penicillium expansum	mature	6.54628
SRR7403501	fruit	infected with penicillium expansum	mature	6.78973
SRR7403508	fruit	infected with penicillium expansum	mature	7.83146
SRR7403502	fruit	infected with penicillium expansum	mature	6.05486
SRR7403503	fruit	infected with penicillium expansum	mature	6.50268
SRR7403505	fruit	infected with penicillium expansum	mature	6.07893
SRR1613973	Central seeds	no	20DAPF	5.03702
SRR1613974	Central seeds	no	20DAPF	5.41214
SRR1613975	Central seeds	no	20DAPF	5.73622
SRR1613976	Lateral seeds	no	20DAPF	4.48222
SRR1613977	Lateral seeds	no	20DAPF	5.77616
SRR1613978	Lateral seeds	no	20DAPF	5.37205
SRR3744786	stem	no	mature	10.4946
SRR3744787	stem	no	mature	10.872
SRR3744772	stem	no	mature	9.17705
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.37084
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.89878
SRR1089478	leaf	Virus-free	plantlets	2.7351
SRR1089477	leaf	ASGV-infected	plantlets	2.92633
SRR767660	leaf	uninfected	fully developed	4.87935
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	10.8559
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.53089
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	13.1845
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.73199
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.08178
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.19706
SRR6308182	young leaf	no	immature leaves	5.55036
SRR3744769	leaf	no	mature	7.04469
SRR3744770	leaf	no	mature	7.16883
SRR3744771	leaf	no	mature	8.60863
SRR5405145	leaf	no	mature	7.38571
SRR6320561	leaf	no	mature	6.30581