Gene detail

Detail information of MD01G1237500 Annotation

Gene ID	Annotation
MD01G1237500	FAR1-related sequence 4

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD01G1237500	mRNA	Chr01	32441365	32445817	-

Sequences

CDS:

MD01G1237500

TTTTTCTTTGTCGTTTTAAAAGAAAAATCCCAAAGGGAAGCTGGCTGGGAGGAGCTTGATGAAGAAGAAGCTGGCAATTGAAATCGGAGCTCCAAGTCAAGCGGATCTCATCTCATCTGTTCATCAGTCTGAAAAGTGAGCGAGTGAGTTGCCTTCAACTTTCTTTCTTCACTAGTTATTGGGGTAGGATTAGGATTAGGGTTACTCTGTCTCATCACTTCCTATTTGTATTTGTCTCTCTCCCGCTCTCGGTAAACCCTATTCAATTAGTAAAATTGCACCTCCATCCATCAATCAGGCTGGCTACCTTGGTGATGGGAACACTGAGCTCCCAAATTTTGAATTTATGTCCATGGGAGAAGCTTCCTTCCTTCCATGTCTGTGGGACCCATGAAAACCTTTGCACCCCTTTCCTTCCCTACCACTTTTGAGGGCGGATGCGGAGTCGATTTGAATTTCCCCACCACCACCACCGTCATGGATTCCTCTGGTCCTGCCCTCGCCCTCGCCACCACTTCAATTGCAGAGCCTCATGACGCCATGGAGTTTGAATCTCATGAAGCCGCATACACCTTCTACAAAGCATATGCCAAGTCCGTGGGTTTCGGCACTGCTAAGTTGAGTAGTCGTCGCTCTAGAGCATCCAAGGAGTTCATTGATGCCAAATTTTCATGCATCCGGTACGGAAACAAGCAGCAGTCCGATGATGCTATCAATCCTCGACCTTCTCCCAAAATTGGCTGCAAGGCGAGCATGCATGTCAAGCGCAGGCCAAATGGTAATTGGTATGTTTATAGTTTCGTAAAGGACCACAACCATGAGCTTTTACCAGATCAAGCACATTTCTTTCGCAGCCACAGAAACACTGACCCCCTTAACAATGATGTTAGAATCCGGAGACGCAAGAGTTTAGCTGCAGTGTCCAGCCTCTTCAGTGCCTATCAAAATGTTGATTGTCTAGAGAGTTACTTGAGAAATCAGCATGACAAGGGACGGATTTTGGTTTTAGAAGCAGGGGATGCTCAACTGCTGCTTGAATATTTTATGCGCCTACAGGAAGACAACCCAAAATTCTTCTATGCAGTTGATCTGAATGAAGAGCATAGGTTGAGAAATGTGTTCTGGGTTGATGCCAAAGCAATGGAAGATTACACTAACTTCAACGATGTTGTTTTCTTTGACACCACATACTTCACAAACAAGTATAAAATACCGCTGGTTCTTTTTATAGGAGTGAACCATCACATTCAGCCCACATTACTTGGCTGTGCTTTGATTGCAGATGATACGGTTTATACTTTTATGTGGCTAATGCAAACATGGTTTATAGCAATGGGTGAACAAGCTCCACGAGTAATACTCACCGACCAGAACGACGCCATCAAAGCGGCTATTCCAGCAGTATTTCCAGGCACACGCCATTGCTTTTCTTTATGGAACATAATGGAGAAGATGCACAGGCAGCTCGAGTTTCTAAGCATGTGGCATGATAGTTTTTTGGAAAAATTTACTAAGTGTATATTCAAGTCCTGGTCAGAACAGCAATTTGAAAAGAGATGGTGGAAACTTATTGATAGATTTAATCTTAGGGAGGTTGGATGGATGCAGTCATTGTATGAAGATCGTACTCATTGGGCCCCTACGTTCATGAGAGATATATCCTTCGCTGGGTTGTCTCCAACTTCACGGTCAGAAAGTTTGAACTCTTCGTTTGACAAATATATTCAAGGGGATACTTCACTGCAAGAGTTTATGGAAAGATACACAGCAATTCTTGAAGATAGGTATGAAGAGGAAGCGAAAGCAAATTTTGATGCTTGGCATGGAACACCTGAGTTAAAGTCTCCATCGCCGTTTGAGAAACAAATGTCACTAGTGTACACACACGAGATTTTCAAAAACTTTCAAGTTGAGGTTTTGGGAGCGGCTGCTTGTCATCTTAAGAAAGAAAATGAAGATGAGACAGCAACAACGTTCAGTGTCAAAGACTTTGAAGACAATCAGAATTATACCGTAGAGTGGAATGAATCAAAATCAGATATATATTGTTCTTGCCACTCATTTGAGTATAAAGGCTATCTCTGTAGACATGCTATTGTTGTTCTCCAAATGTCTGGTGTTTTCATCATCCCTCCCAAATATATATTGCAGCGATGGACAAATGCTGCTATGAGCAGGCATACCATTGGTGAAAGAGTGGATGAGGTTCAGTCTAAAGCCCGTCGCTACAATGATTTATGTCGACGGGCCATAATATTGGGTGAAGAGGGGTCACTCTCTCAAGAAAGTTATGATGTAGCATTATCGGCCATAAAAGAAGCGTTGAAGCAATGTGCAAGTTTAAACAACTGTCTTGAGAACAATGCAAAACCTCATGATTCAGCAATACATGGTGTTTGCGGTGTTGATGAAGAGAATCAATGCAGCACTACATCTGGTGCCAACAAGACTCCTAGGAGAGCCGGGTCCGGGAAGGAGGTGGCTAGGAATGGGAATAGCACAAGCAAGAAAGGAAAGGTACCTCAGCTGGAAGCTATGAGCTTTGGAATGCAAGACGGCCATTTCCAAATGCAACTTTCTGACTCAAGGCCCATGCAGTTGCATAATGCGGTGCCAACAATGTTTCAGAGTGTTGCATCAACACAGCTCCATAATGTGGCATCAACACATGTGCATGAAAATCTCCCTCAGTAACTCAAACATTACCTCCTGTACAGACAAACCGCTGAAGGACTGAGTGAGTGAATGACTGCAGTAAAAGAAAAGGTCAGGTGCGATTGCTGGTAAATTATATGTTGTGCATTTAGGTGGGCAGCAATTAGATTTCAATTGGTAATGCCCGTGTAAAACAGTTGTTTTGTAAGTTGTGCATTTCATTTCGTTAGCTTTTTGTTCGAGAAGTTGACTTGTTTGTGTGAGCTGTTAGAGTCGTATGTGTATTTCATTAGGGGTTGGGTTGGGTTGGGTTGGGTGGTTTCAAGTGAGGAGTATAGAAAGAATCATTTACTTGCAGAAGCTTGATTGAAGAATGAATGAGACGCGAGGGAAGGGTAATTTTCAGGTTGTTATTCGGACTCCAGATTTGTCTTGGAATGAGGAGAAGAGAATAGAGTAAATGTATCTACGCTTTTTCTTTTCCAATTCAGCATCTGATCATCCCAGAATCCGATTCCTATTCTTTAGTTATTAAGAGCGACGGTCGCTGGCGGAGTCACAAGTCAGAGTCGAATGCGAACCATGGATCGGATCCGGACGTGTTTGGAATTGAAAGTGAAAAAGGAAGAGCAAACAAAATGAAAAAGGATTGCCACCGTGGGGTTGGGCGGGGCGGGGTGGACCGCAAGGAAATGGAATAAGAGCCCAACTGGTAGATTGTTCTTGTCCCCCCACCCATCAAAAAACAAAAACAAAATATCAAAGGAAACGGTTTGAGACGCAAGTGGGTCCCCTCCCACCGAAGGTAGCGGCAGCGCGCAGCCTATATATGCCG

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	FAR1

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G76320.1	1	CPD25;FRS4\|CHLOROPLAST DIVISION MUTANT 25;FAR1-related sequence 4
Arabidopsis thaliana	AT1G76320.2	0.984	CPD25;FRS4\|CHLOROPLAST DIVISION MUTANT 25;FAR1-related sequence 4
Prunus persica	Prupe.2G327900.1.p	1	FAR1-related sequence 4
Pyrus communis	PCP018175.1	1	-
Pyrus x bretschneideri	Pbr013436.1	1	-
Rosa multiflora	Rmu_co8407315.1_g000001.1	1	-
Rubus occidentalis	Ro07_G08947	1	-
Fragaria vesca	mrna12562.1	1	FAR1-related sequence 4
Populus trichocarpa	Potri.003G207100.1	1	FAR1-related sequence 4

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03101.11	FAR1	67	152	6.00E-24
PF10551.5	MULE	271	360	2.80E-18
PF04434.13	SWIM	545	579	8.00E-09

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.2738
SRR5252888	dormant buds	no	dormant buds(0 month)	14.8643
SRR5252889	dormant buds	no	dormant buds(0 month)	15.6019
SRR5252886	dormant buds	no	dormant buds(1 months)	13.6181
SRR5252887	dormant buds	no	dormant buds(1 months)	13.4699
SRR5252884	dormant buds	no	dormant buds(2 months)	16.0729
SRR5252882	dormant buds	no	dormant buds(3 months)	14.5618
SRR5252883	dormant buds	no	dormant buds(3 months)	14.4878
SRR5252880	dormant buds	no	dormant buds(4 months)	17.1574
SRR5252881	dormant buds	no	dormant buds(4 months)	17.2637
SRR5252878	bud break	no	bud break	16.3631
SRR5252879	bud break	no	bud break	10.0119
SRR3744766	flower	no	mature	9.32577
SRR3744767	flower	no	mature	9.32775
SRR3744768	flower	no	mature	8.42378
SRR6308190	stigmas	no	open flowers	4.29646
SRR6308181	styles	no	open flowers	3.56659
SRR6308188	filaments	no	open flowers	3.82934
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	6.20271
SRR6308192	pollen	no	open flowers	18.9051
SRR6308191	petals	no	open flowers	2.15748
SRR6308194	sepals	no	open flowers	3.01039
SRR6308193	receptacles	no	open flowers	3.66845
SRR6308189	ovaries	no	open flowers	4.28496
SRR3384922	fruit	no	1 week after full bloom	1.82354
SRR3384921	fruit	no	2 week after full bloom	2.19593
SRR3384920	fruit	no	3 week after full bloom	2.82429
SRR3384919	fruit	no	4 week after full bloom	2.66944
SRR3384923	fruit	no	5 week after full bloom	2.82493
SRR3384918	fruit	no	6 week after full bloom	2.35854
SRR3384917	fruit	no	8 week after full bloom	3.19039
SRR3384916	fruit	no	10 week after full bloom	3.14829
SRR3384915	fruit	no	12 week after full bloom	2.38119
SRR3384914	fruit	no	14 week after full bloom	3.22403
SRR3384913	fruit	no	16 week after full bloom	2.10067
SRR3384912	fruit	no	18 week after full bloom	3.2098
SRR3384911	fruit	no	19 week after full bloom	2.49679
SRR3384910	fruit	no	20 week after full bloom	2.96085
SRR768128	whole fruit	no	25 days post anthesis	5.91325
SRR768129	whole fruit	no	35 days post anthesis	2.68806
SRR768130	whole fruit	no	60 days post anthesis	4.60806
SRR768131	whole fruit	no	87 days post anthesis	6.97516
SRR7343308	immature fruit flesh	no	immature	8.20657
SRR7343309	immature fruit flesh	no	immature	6.03698
SRR6320494	ripe fruit flesh	no	mature	9.45205
SRR5405143	ripe fruit peel	no	mature	11.9758
SRR6320572	ripe fruit peel	no	mature	9.61093
SRR7403504	fruit	uninfected	mature	10.2825
SRR7403506	fruit	uninfected	mature	10.862
SRR7403507	fruit	uninfected	mature	11.3542
SRR7403500	fruit	infected with penicillium expansum	mature	5.07919
SRR7403501	fruit	infected with penicillium expansum	mature	4.2793
SRR7403508	fruit	infected with penicillium expansum	mature	4.69749
SRR7403502	fruit	infected with penicillium expansum	mature	5.28514
SRR7403503	fruit	infected with penicillium expansum	mature	5.23709
SRR7403505	fruit	infected with penicillium expansum	mature	5.36058
SRR1613973	Central seeds	no	20DAPF	3.12182
SRR1613974	Central seeds	no	20DAPF	3.70758
SRR1613975	Central seeds	no	20DAPF	3.09026
SRR1613976	Lateral seeds	no	20DAPF	2.93555
SRR1613977	Lateral seeds	no	20DAPF	2.96693
SRR1613978	Lateral seeds	no	20DAPF	3.30986
SRR3744786	stem	no	mature	15.1986
SRR3744787	stem	no	mature	14.6376
SRR3744772	stem	no	mature	15.6009
SRX765691	seedling shoot apex	no	4-6 week old seedling	8.04834
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.23328
SRR1089478	leaf	Virus-free	plantlets	9.0204
SRR1089477	leaf	ASGV-infected	plantlets	8.36231
SRR767660	leaf	uninfected	fully developed	3.21557
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	8.92558
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.05836
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.15363
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.97252
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.0406
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.70061
SRR6308182	young leaf	no	immature leaves	5.09934
SRR3744769	leaf	no	mature	9.92036
SRR3744770	leaf	no	mature	10.4737
SRR3744771	leaf	no	mature	11.0189
SRR5405145	leaf	no	mature	6.71996
SRR6320561	leaf	no	mature	5.15