Gene detail

Detail information of MD02G1043500 Annotation

Gene ID	Annotation
MD02G1043500	proteinaceous RNase P 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0795	magnesium-protoporphyrin O-methyltransferase [EC:2.1.1.11] 26S proteasome regulatory subunit T3 elongation factor Ts chloroplast stroma chloroplast envelope ATP-dependent RNA helicase DDX21 [EC:3.6.4.13] proteinaceous RNase P [EC:3.1.26.5] magnesium protoporphyrin IX methyltransferase activity proteasome regulatory particle

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1043500	mRNA	Chr02	3556977	3560796	+

Sequences

CDS:

MD02G1043500

ATGGAGCTCTTCCAACGGCCACACATGGCCTCCTTCACCTCCAACGCACTGCAGCAAAAGCACCACCACCACCACCTCCTCTCCGCCACCCTCTGTAAGTGCCCGTCAGCTTTCCACGTCTTTAAATTCCGTTTTCCTTCTCATATTTTCACTTTCTCGCCACCCAAACAGACCCTTAATCTTTATCCACTTCCACTAGCTAGACAAAACATTAGCCACATAGTTGCAAAGTTATCCTCGACAACGTACCACGAACCGTACACAAAATCGCAGAACTCAGGAACTGGAAGTGGTTCGGAGTTTTCTTCCTTAAAGTCCACGGAACAACGGGTTTCGAGAAAACCCGTAAAGAACCATGTCGGTTCAGGAGTGGAGAAGAAGGGTGAAGATACTAGGAAAAATCTTGTCTTTAGAAAGAGGAGGGAGGGGAATGGTCCTAATGGGCCAAATGGGCCAAATGGGCATTCTTCTAGGAGGTTTAGAGATGAGAATGCGGTAAAATCTTCGAAAAGCCGAGGCAGTTTAGGGGTAAAGGAGGGGAGGAACAAGAGGGGTGGTGGTAATCAGGTGGGAGGAGAAGAGAGAAGGGGGAGAGGGTTGAAGAAGTATGACGCTGATTTGCCGGAAGTTAAGATGCGAGTAGGTTTGGATATGTGCTCGAAGAGAGGGGATGTGATGGGTGCAATTAGGTTCTATGATTTGGCTCAAACGGAAGAGATTAAGTTGGAGCAGTACCATTATACTGTGCTGTTGTATCTCTGCTCTTCTGCAGCTGTTGGTGTTGTTCGTCCGGCGAAGAGTGGGAGTGGGAGTCGGACTTTGGATACCTTGGATTCGCACAGTGAAGAAACTAGGGTGGGATCCATGGATACATCAAATTTGGACAATGAGGACCTGGATGATACCTGTGGAAGTAACAGTTTTGATGATGATTCGGATGGTACTTCCGATGAAAATGAGAATTTAGCATGGTTTTCTAATGGGTTTGTGAAGCGAAATTCCCGCCTTTTAGATGGACTGAACTACCCCACAAAGGGTGGAGATGATTCTTCTAATGTAAAAGAAGGGAGCAGTAAGCAAGAAGATAATGGAATTCGGGTTAGTGAAGATGTGAAGAAGTATGCGCTCAAAAGGGGATTTGAGATCTATGAGAAGATGTGTTCGGATAATGTTCCGGTGAATGAGGCAGCATTGACATCTGTGGCTAGAATGGCAATGTCAATGGGTGATGGAGACATGGCATTTGATATGGTGAGGCAAATGAAGTCAATGGGAATAAATCCTAGACTCCGTTCCTACGGTCCTGCATTATCTGCTTTTTGCCATAGCGGAGATATTGATAAAGCATTTGCTGTTGAGAAACACATGTTGGAGCATGGTGTTTATCCGGAAGAGCCTGAACTTGAAGCCCTCTTAAGAGTGAGTGTGGGAGTTGGTAAAGGCGACAAGGTGTATTATATGCTGCACAAACTAAGAACAAGCGTAAGGAGGGTGTCGCCGTCTACTGCAGATTTAATCGTAAAATGGTTTCTTAGTAAGGAAGCTTCAAGAGTGGGGAGAACAAAATGGGATCGAAGGTCTATAAGGGATGCAATCGAGAATGGAGGTGGGGGCTGGCATGGGCAGGGCTGGTTGGGAAAAGGGAAGTGGTCTGTGTTACGTACTACAATCGGAGATGATGGCTTGTGCAAATGCTGTGGGGAAAAACTGGCCACAATTGACCTTGATCCCGTAGAAACAGAAAACTTTGCCGAGTCAGTTGCATCAATAGCTATAAAAAGAGAGAAAAACTCAAGCTTTCAGAAATTTCAAAAATGGCTGGACTATTATGGACCTTTTGAAGCAGTGGTGGATGGAGCTAATGTAGGCCTTTTCAGTCAGAAGAAATTTGTCCCGTCCAAGGTCAATGCTGTTGTTAATGGAATACGGCAGAAACTTCCTTCAAAGAAATGGCCACTTATTGTTCTTCATAATAGGCGCATCACCGGAGGCAGAATGGATGAGAGAGTAAATAGGGCACTGATTGAGAAGTGGCAAAATGCCGATGCTCTATATGCAACACCTACTGGTTCAAATGATGATTGGTACTGGTTGTATGCAGCTATAAAGTTCAAGTGCTTACTTGTGACAAATGATGAGATGAGAGACCATATATTTCAACTTCTCGGAAATGATTTCTTTCCCAGATGGAAAGAAAGGCATCAAGTGCATTTCACTTTTTCTGATGCTGGTCCAGTCTTTCACATGCCTCCTCCCTGTTCTGTTGTAATACAGGAATCAGAGGAAGGGCACTGGCACATTCCAGTTGTATCAGAACATGAGCGCGAATCAGAAAGAACATGGCTATGCATTATGCGAGCTAAATCACGCACAGCAACAAAGGATTCTGCAGCCATCCCTGAAGATGCACAACCCCCTCGTCATAACGGATATGCAAGGTCAGCCACCCGAACTGGTGTTGATTCACAGCCACTGAATAGTGGCAACAAAAAATATTCTAAACACAAACCTAAGGAATTTATCAAGAATGTCAAAGATATTCTGTTGGGGTCCGTGACCTCGGATCATCACTCGATTGTGCCAGACATTGCAACTGCAGAGAAGATTGGTGGATGCACCATTGATTTCCAAATATAAAGTTTATGCAATCCTGTTCAGGAACTTCACTGAGGCATTAGGTAGTAGCCAATGAGCTCCCAACTGAGAGGTTTTTTGTATGGTTGGCAGCTGATTTTGCTAGTTGGAGAAGGATAGAGATTTGCGATTGCAGAAAGCACTTTTGGGAATATACTTTTAGTAGGTTAGAGCTTTTTTTCTCCTCCTTTTGCACGCGTGTGTAGAGTGGGGTTGGCTGATAGGGTGGTCCTCATATGCCACAAGCCTTTCCCTTGGTTACATGATCTTTGATTTAAGTAAACTCAATTTAATGCCAGACCTCATAGCTCAAGTAGTTAAGATCATTTATCTCTGCTTTTAAGATCATGTGTTTGATTTCTCTTTCACCAATATCGCTTGTTTGTAAAAGGGAACTCAATTTGATATATACATTGACCTTCTAAATGAGAACTTAATAACATGTTGGAACGAGCCTCG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.7G233500.1.p	1	proteinaceous RNase P 1
Pyrus communis	PCP000558.1	1	-
Pyrus x bretschneideri	Pbr014086.1	1	-
Rosa multiflora	Rmu_sc0000226.1_g000018.1	1	-
Rubus occidentalis	Ro01_G07658	1	-
Fragaria vesca	mrna30924.1	1	proteinaceous RNase P 1
Vitis vinifera	GSVIVT01015365001	1	proteinaceous RNase P 3
Solanum lycopersicum	Solyc07g019650.2.1	1	proteinaceous RNase P 1
Populus trichocarpa	Potri.006G160300.1	1	proteinaceous RNase P 1
Nicotiana benthamiana	Niben101Scf03164g06008.1	1	Pentatricopeptide repeat-containing protein
Oryza sativa	LOC_Os02g17360.1	1	"PPR repeat domain containing protein, putative, expressed"
Zea mays	GRMZM2G418206_P01	1	-

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
K18213	proteinaceous RNase P	EC:3.1.26.5

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16953.1	PRORP	557	783	1.00E-77

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	12.3942
SRR5252888	dormant buds	no	dormant buds(0 month)	0.615063
SRR5252889	dormant buds	no	dormant buds(0 month)	0.742206
SRR5252886	dormant buds	no	dormant buds(1 months)	1.23708
SRR5252887	dormant buds	no	dormant buds(1 months)	0.691987
SRR5252884	dormant buds	no	dormant buds(2 months)	1.16036
SRR5252882	dormant buds	no	dormant buds(3 months)	1.27461
SRR5252883	dormant buds	no	dormant buds(3 months)	1.17755
SRR5252880	dormant buds	no	dormant buds(4 months)	1.99107
SRR5252881	dormant buds	no	dormant buds(4 months)	1.31987
SRR5252878	bud break	no	bud break	1.21193
SRR5252879	bud break	no	bud break	1.64934
SRR3744766	flower	no	mature	1.37688
SRR3744767	flower	no	mature	1.62304
SRR3744768	flower	no	mature	1.74286
SRR6308190	stigmas	no	open flowers	1.9091
SRR6308181	styles	no	open flowers	1.33838
SRR6308188	filaments	no	open flowers	0.458249
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.296193
SRR6308192	pollen	no	open flowers	0.335854
SRR6308191	petals	no	open flowers	0.245218
SRR6308194	sepals	no	open flowers	2.18606
SRR6308193	receptacles	no	open flowers	1.17506
SRR6308189	ovaries	no	open flowers	1.35618
SRR3384922	fruit	no	1 week after full bloom	1.32284
SRR3384921	fruit	no	2 week after full bloom	0.814213
SRR3384920	fruit	no	3 week after full bloom	0.766372
SRR3384919	fruit	no	4 week after full bloom	0.982085
SRR3384923	fruit	no	5 week after full bloom	0.651596
SRR3384918	fruit	no	6 week after full bloom	0.604467
SRR3384917	fruit	no	8 week after full bloom	0.977419
SRR3384916	fruit	no	10 week after full bloom	0.657548
SRR3384915	fruit	no	12 week after full bloom	0.536554
SRR3384914	fruit	no	14 week after full bloom	0.598438
SRR3384913	fruit	no	16 week after full bloom	0.214523
SRR3384912	fruit	no	18 week after full bloom	0.287598
SRR3384911	fruit	no	19 week after full bloom	0.358592
SRR3384910	fruit	no	20 week after full bloom	0.60473
SRR768128	whole fruit	no	25 days post anthesis	2.87855
SRR768129	whole fruit	no	35 days post anthesis	1.23694
SRR768130	whole fruit	no	60 days post anthesis	0.57607
SRR768131	whole fruit	no	87 days post anthesis	0.476974
SRR7343308	immature fruit flesh	no	immature	1.68415
SRR7343309	immature fruit flesh	no	immature	1.83221
SRR6320494	ripe fruit flesh	no	mature	0.441776
SRR5405143	ripe fruit peel	no	mature	0.0852104
SRR6320572	ripe fruit peel	no	mature	0.899497
SRR7403504	fruit	uninfected	mature	0.562566
SRR7403506	fruit	uninfected	mature	0.380942
SRR7403507	fruit	uninfected	mature	0.398027
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0.0344409
SRR7403505	fruit	infected with penicillium expansum	mature	0.0619165
SRR1613973	Central seeds	no	20DAPF	0.326333
SRR1613974	Central seeds	no	20DAPF	0.346974
SRR1613975	Central seeds	no	20DAPF	0.369609
SRR1613976	Lateral seeds	no	20DAPF	0.41165
SRR1613977	Lateral seeds	no	20DAPF	0.367097
SRR1613978	Lateral seeds	no	20DAPF	0.453658
SRR3744786	stem	no	mature	1.51088
SRR3744787	stem	no	mature	1.06207
SRR3744772	stem	no	mature	1.38526
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.63407
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.44105
SRR1089478	leaf	Virus-free	plantlets	2.9028
SRR1089477	leaf	ASGV-infected	plantlets	3.95984
SRR767660	leaf	uninfected	fully developed	5.48578
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.73713
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	9.6692
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.656048
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.45789
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.54914
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.55407
SRR6308182	young leaf	no	immature leaves	3.37551
SRR3744769	leaf	no	mature	3.75863
SRR3744770	leaf	no	mature	3.95326
SRR3744771	leaf	no	mature	4.07431
SRR5405145	leaf	no	mature	5.2451
SRR6320561	leaf	no	mature	3.68434