Gene detail

Detail information of MD02G1050200 Annotation

Gene ID	Annotation
MD02G1050200	multiprotein bridging factor 1C

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0052	response to hydrogen peroxide response to high light intensity protein folding response to heat response to endoplasmic reticulum stress heat acclimation cytoplasm protein unfolding ATPase activator activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1050200	mRNA	Chr02	3919158	3919941	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	MBF1

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G24500.1	1	ATMBF1C;MBF1C\|multiprotein bridging factor 1C
Prunus persica	Prupe.7G229000.1.p	1	multiprotein bridging factor 1C
Pyrus x bretschneideri	Pbr027587.1	1	-
Rubus occidentalis	Ro01_G07700	1	-
Solanum lycopersicum	Solyc01g104740.2.1	1	multiprotein bridging factor 1C
Nicotiana benthamiana	Niben101Scf01587g01006.1	1	Multiprotein-bridging factor 1c
Oryza sativa	LOC_Os06g39240.1	1	"endothelial differentiation-related factor 1, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0043565	sequence-specific DNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01381.18	HTH_3	89	138	2.10E-14

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	46.231
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.300006
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0.280005
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0.838341
SRR5252881	dormant buds	no	dormant buds(4 months)	0.930524
SRR5252878	bud break	no	bud break	0.835013
SRR5252879	bud break	no	bud break	0.925938
SRR3744766	flower	no	mature	29.444
SRR3744767	flower	no	mature	24.1852
SRR3744768	flower	no	mature	25.8705
SRR6308190	stigmas	no	open flowers	29.4578
SRR6308181	styles	no	open flowers	21.3288
SRR6308188	filaments	no	open flowers	19.0853
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	16.0965
SRR6308192	pollen	no	open flowers	89.1911
SRR6308191	petals	no	open flowers	16.7017
SRR6308194	sepals	no	open flowers	19.2026
SRR6308193	receptacles	no	open flowers	32.4605
SRR6308189	ovaries	no	open flowers	16.31
SRR3384922	fruit	no	1 week after full bloom	11.4064
SRR3384921	fruit	no	2 week after full bloom	43.0006
SRR3384920	fruit	no	3 week after full bloom	380.377
SRR3384919	fruit	no	4 week after full bloom	57.7222
SRR3384923	fruit	no	5 week after full bloom	77.2898
SRR3384918	fruit	no	6 week after full bloom	189.678
SRR3384917	fruit	no	8 week after full bloom	110.985
SRR3384916	fruit	no	10 week after full bloom	222.343
SRR3384915	fruit	no	12 week after full bloom	376.44
SRR3384914	fruit	no	14 week after full bloom	241.992
SRR3384913	fruit	no	16 week after full bloom	109.054
SRR3384912	fruit	no	18 week after full bloom	276.786
SRR3384911	fruit	no	19 week after full bloom	31.929
SRR3384910	fruit	no	20 week after full bloom	87.3345
SRR768128	whole fruit	no	25 days post anthesis	240.67
SRR768129	whole fruit	no	35 days post anthesis	45.1103
SRR768130	whole fruit	no	60 days post anthesis	295.599
SRR768131	whole fruit	no	87 days post anthesis	26.0742
SRR7343308	immature fruit flesh	no	immature	5.43558
SRR7343309	immature fruit flesh	no	immature	6.98656
SRR6320494	ripe fruit flesh	no	mature	51.1807
SRR5405143	ripe fruit peel	no	mature	3.93583
SRR6320572	ripe fruit peel	no	mature	79.1006
SRR7403504	fruit	uninfected	mature	26.7376
SRR7403506	fruit	uninfected	mature	28.2444
SRR7403507	fruit	uninfected	mature	25.9013
SRR7403500	fruit	infected with penicillium expansum	mature	22.6604
SRR7403501	fruit	infected with penicillium expansum	mature	24.7342
SRR7403508	fruit	infected with penicillium expansum	mature	24.6425
SRR7403502	fruit	infected with penicillium expansum	mature	51.4255
SRR7403503	fruit	infected with penicillium expansum	mature	51.9019
SRR7403505	fruit	infected with penicillium expansum	mature	52.0965
SRR1613973	Central seeds	no	20DAPF	2.01246
SRR1613974	Central seeds	no	20DAPF	1.75484
SRR1613975	Central seeds	no	20DAPF	1.9493
SRR1613976	Lateral seeds	no	20DAPF	8.42946
SRR1613977	Lateral seeds	no	20DAPF	5.13299
SRR1613978	Lateral seeds	no	20DAPF	6.71149
SRR3744786	stem	no	mature	40.6963
SRR3744787	stem	no	mature	47.1801
SRR3744772	stem	no	mature	40.1641
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.26211
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	35.5802
SRR1089478	leaf	Virus-free	plantlets	177.461
SRR1089477	leaf	ASGV-infected	plantlets	114.648
SRR767660	leaf	uninfected	fully developed	12.8729
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	3.12068
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	10.8073
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	9.78712
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	16.9448
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	29.4297
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.406
SRR6308182	young leaf	no	immature leaves	0.309513
SRR3744769	leaf	no	mature	10.245
SRR3744770	leaf	no	mature	11.9258
SRR3744771	leaf	no	mature	11.7332
SRR5405145	leaf	no	mature	2.23332
SRR6320561	leaf	no	mature	8.73874