| Gene ID | Annotation |
|---|---|
| MD02G1057500 | elongation factor Ts family protein |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| Co-expression network | CFinderM0200 | chloroplast stroma isopentenyl diphosphate biosynthetic process thylakoid membrane organization chloroplast thylakoid membrane signal recognition particle rRNA processing carotenoid biosynthetic process chloroplast envelope signal sequence binding signal recognition particle chloroplast relocation SRP-dependent cotranslational protein targeting to membrane chlorophyll biosynthetic process protein import into chloroplast thylakoid membrane photosystem II stabilization 7S RNA binding transcription from plastid promoter response to cold defense response to bacterium chloroplast inner membrane chloroplast thylakoid lumen mRNA binding defense response ribosome salicylic acid biosynthetic process photosystem II assembly regulation of protein dephosphorylation pyrophosphate-dependent phosphofructokinase complex stomatal complex morphogenesis photosynthetic electron transport in photosystem I |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD02G1057500 | mRNA | Chr02 | 4639749 | 4645140 | - |
| CDS: |
| MD02G1057500 |
| Protein: |
| MD02G1057500 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G29060.1 | 1 | emb2726|embryo defective 2726 |
| Prunus persica | Prupe.7G225300.1.p | 1 | elongation factor Ts family protein |
| Rosa multiflora | Rmu_sc0002270.1_g000032.1 | 1 | - |
| Rubus occidentalis | Ro01_G10504 | 1 | - |
| Fragaria vesca | mrna11863.1 | 1 | elongation factor Ts family protein |
| Vitis vinifera | GSVIVT01015347001 | 1 | elongation factor Ts family protein |
| Solanum lycopersicum | Solyc07g018360.2.1 | 1 | elongation factor Ts family protein |
| Populus trichocarpa | Potri.018G083900.1 | 1 | elongation factor Ts family protein |
| Nicotiana benthamiana | Niben101Scf02757g01001.1 | 1 | elongation factor Ts family protein LENGTH=953 |
| Nicotiana benthamiana | Niben101Scf03142g02005.1 | 0.89 | elongation factor Ts family protein LENGTH=953 |
| Oryza sativa | LOC_Os12g35630.3 | 1 | "elongation factor TS family protein, expressed" |
| GO term | Description | Category |
|---|---|---|
| GO:0005622 | intracellular | cellular component |
| GO:0003746 | translation elongation factor activity | molecular_function |
| GO:0005515 | protein binding | molecular_function |
| GO:0006414 | translational elongation | biological_process |
| KO | Description | Enzyme |
|---|---|---|
| K02357 | elongation factor Ts | - |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00575.19 | S1 | 135 | 205 | 3.10E-16 |
| PF00575.19 | S1 | 248 | 313 | 2.00E-06 |
 |