Gene detail

Detail information of MD02G1066000 Annotation

Gene ID	Annotation
MD02G1066000	6-phosphogluconate dehydrogenase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1066000	mRNA	Chr02	5338120	5339668	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G29120.1	1	6-phosphogluconate dehydrogenase family protein
Prunus persica	Prupe.7G219600.1.p	1	6-phosphogluconate dehydrogenase family protein
Pyrus communis	PCP044316.1	1	-
Rosa multiflora	Rmu_sc0017125.1_g000007.1	1	-
Rosa multiflora	Rmu_sc0009216.1_g000005.1	1	-
Rubus occidentalis	Ro01_G00816	1	-
Fragaria vesca	mrna11301.1	1	6-phosphogluconate dehydrogenase family protein
Populus trichocarpa	Potri.018G088000.1	1	6-phosphogluconate dehydrogenase family protein
Nicotiana benthamiana	Niben101Scf06562g00009.1	1	"6-phosphogluconate dehydrogenase, decarboxylating"
Oryza sativa	LOC_Os01g53910.1	1	"dehydrogenase, putative, expressed"
Zea mays	GRMZM5G818186_P01	1	Putative

Gene Ontology

GO term	Description	Category
GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	molecular_function
GO:0050662	coenzyme binding	molecular_function
GO:0055114	oxidation-reduction process	biological_process
GO:0006098	pentose-phosphate shunt	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03446.11	NAD_binding_2	51	211	5.40E-44
PF14833.2	NAD_binding_11	214	331	4.00E-30

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	10.6374
SRR5252888	dormant buds	no	dormant buds(0 month)	3.48219
SRR5252889	dormant buds	no	dormant buds(0 month)	5.12244
SRR5252886	dormant buds	no	dormant buds(1 months)	1.82554
SRR5252887	dormant buds	no	dormant buds(1 months)	2.16406
SRR5252884	dormant buds	no	dormant buds(2 months)	1.90676
SRR5252882	dormant buds	no	dormant buds(3 months)	3.34666
SRR5252883	dormant buds	no	dormant buds(3 months)	3.19091
SRR5252880	dormant buds	no	dormant buds(4 months)	2.74356
SRR5252881	dormant buds	no	dormant buds(4 months)	3.57485
SRR5252878	bud break	no	bud break	5.10891
SRR5252879	bud break	no	bud break	2.10799
SRR3744766	flower	no	mature	19.8823
SRR3744767	flower	no	mature	19.0918
SRR3744768	flower	no	mature	19.3366
SRR6308190	stigmas	no	open flowers	11.6593
SRR6308181	styles	no	open flowers	9.45429
SRR6308188	filaments	no	open flowers	8.57163
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.91453
SRR6308192	pollen	no	open flowers	8.62485
SRR6308191	petals	no	open flowers	4.70807
SRR6308194	sepals	no	open flowers	5.88122
SRR6308193	receptacles	no	open flowers	8.57176
SRR6308189	ovaries	no	open flowers	11.0396
SRR3384922	fruit	no	1 week after full bloom	21.5962
SRR3384921	fruit	no	2 week after full bloom	20.1063
SRR3384920	fruit	no	3 week after full bloom	24.7961
SRR3384919	fruit	no	4 week after full bloom	24.6322
SRR3384923	fruit	no	5 week after full bloom	29.6093
SRR3384918	fruit	no	6 week after full bloom	35.9861
SRR3384917	fruit	no	8 week after full bloom	43.5968
SRR3384916	fruit	no	10 week after full bloom	42.2568
SRR3384915	fruit	no	12 week after full bloom	35.8202
SRR3384914	fruit	no	14 week after full bloom	36.4803
SRR3384913	fruit	no	16 week after full bloom	39.3319
SRR3384912	fruit	no	18 week after full bloom	46.8987
SRR3384911	fruit	no	19 week after full bloom	43.9104
SRR3384910	fruit	no	20 week after full bloom	43.7444
SRR768128	whole fruit	no	25 days post anthesis	5.99173
SRR768129	whole fruit	no	35 days post anthesis	15.0079
SRR768130	whole fruit	no	60 days post anthesis	27.0214
SRR768131	whole fruit	no	87 days post anthesis	13.715
SRR7343308	immature fruit flesh	no	immature	13.2227
SRR7343309	immature fruit flesh	no	immature	16.4945
SRR6320494	ripe fruit flesh	no	mature	33.4973
SRR5405143	ripe fruit peel	no	mature	42.8262
SRR6320572	ripe fruit peel	no	mature	47.3723
SRR7403504	fruit	uninfected	mature	43.7933
SRR7403506	fruit	uninfected	mature	43.4396
SRR7403507	fruit	uninfected	mature	41.9941
SRR7403500	fruit	infected with penicillium expansum	mature	3.93341
SRR7403501	fruit	infected with penicillium expansum	mature	3.45461
SRR7403508	fruit	infected with penicillium expansum	mature	4.29379
SRR7403502	fruit	infected with penicillium expansum	mature	6.44027
SRR7403503	fruit	infected with penicillium expansum	mature	7.11911
SRR7403505	fruit	infected with penicillium expansum	mature	7.3991
SRR1613973	Central seeds	no	20DAPF	11.115
SRR1613974	Central seeds	no	20DAPF	10.1817
SRR1613975	Central seeds	no	20DAPF	13.901
SRR1613976	Lateral seeds	no	20DAPF	10.6595
SRR1613977	Lateral seeds	no	20DAPF	10.868
SRR1613978	Lateral seeds	no	20DAPF	9.04623
SRR3744786	stem	no	mature	27.6444
SRR3744787	stem	no	mature	28.3713
SRR3744772	stem	no	mature	26.6697
SRX765691	seedling shoot apex	no	4-6 week old seedling	11.2265
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	9.98069
SRR1089478	leaf	Virus-free	plantlets	19.6717
SRR1089477	leaf	ASGV-infected	plantlets	14.2585
SRR767660	leaf	uninfected	fully developed	9.15847
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	52.833
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.32874
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	12.6764
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	2.72943
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.54527
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	16.814
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	10.0094
SRR6308182	young leaf	no	immature leaves	8.69271
SRR3744769	leaf	no	mature	25.9296
SRR3744770	leaf	no	mature	25.227
SRR3744771	leaf	no	mature	26.542
SRR5405145	leaf	no	mature	40.3915
SRR6320561	leaf	no	mature	10.7015