Gene detail

Detail information of MD02G1072700 Annotation

Gene ID	Annotation
MD02G1072700	histone acetyltransferase of the GNAT family 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0163	pyrimidine ribonucleotide biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1072700	mRNA	Chr02	5889116	5892401	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Epigenetic Regulators	HAG

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G56740.1	1	HAC07;HAC7;HAG02;HAG2\|histone acetyltransferase of the GNAT family 2
Prunus persica	Prupe.7G214700.1.p	1	histone acetyltransferase of the GNAT family 2
Pyrus communis	PCP043798.1	1	-
Rosa multiflora	Rmu_sc0018576.1_g000001.1	1	-
Rubus occidentalis	Ro01_G00860	1	-
Fragaria vesca	mrna11375.1	1	histone acetyltransferase of the GNAT family 2
Vitis vinifera	GSVIVT01015248001	1	histone acetyltransferase of the GNAT family 2
Solanum lycopersicum	Solyc02g068580.1.1	1	histone acetyltransferase of the GNAT family 2
Populus trichocarpa	Potri.013G068200.1	1	histone acetyltransferase of the GNAT family 2
Nicotiana benthamiana	Niben101Scf04028g02018.1	1	Histone acetyltransferase type B catalytic subunit
Nicotiana benthamiana	Niben101Scf03307g08018.1	0.778	Histone acetyltransferase type B catalytic subunit
Oryza sativa	LOC_Os09g17850.1	1	"acetyltransferase type B catalytic subunit, putative, expressed"
Zea mays	GRMZM5G851405_P01	1	protein_coding

Gene Ontology

GO term	Description	Category
GO:0004402	histone acetyltransferase activity	molecular_function
GO:0016568	chromatin modification	biological_process
GO:0016573	histone acetylation	biological_process
GO:0006348	chromatin silencing at telomere	biological_process
GO:0005634	nucleus	cellular component

KEGG

KO	Description	Enzyme
K11303	histone acetyltransferase 1	EC:2.3.1.48

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10394.5	Hat1_N	31	200	1.70E-20

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	8.08895
SRR5252888	dormant buds	no	dormant buds(0 month)	14.105
SRR5252889	dormant buds	no	dormant buds(0 month)	10.7821
SRR5252886	dormant buds	no	dormant buds(1 months)	12.6764
SRR5252887	dormant buds	no	dormant buds(1 months)	11.5941
SRR5252884	dormant buds	no	dormant buds(2 months)	15.3092
SRR5252882	dormant buds	no	dormant buds(3 months)	19.5041
SRR5252883	dormant buds	no	dormant buds(3 months)	16.1659
SRR5252880	dormant buds	no	dormant buds(4 months)	21.1218
SRR5252881	dormant buds	no	dormant buds(4 months)	20.0541
SRR5252878	bud break	no	bud break	17.1191
SRR5252879	bud break	no	bud break	18.8117
SRR3744766	flower	no	mature	3.48914
SRR3744767	flower	no	mature	3.60213
SRR3744768	flower	no	mature	3.44647
SRR6308190	stigmas	no	open flowers	5.44381
SRR6308181	styles	no	open flowers	4.39883
SRR6308188	filaments	no	open flowers	5.32591
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	5.71587
SRR6308192	pollen	no	open flowers	20.6267
SRR6308191	petals	no	open flowers	4.3707
SRR6308194	sepals	no	open flowers	6.97149
SRR6308193	receptacles	no	open flowers	10.2753
SRR6308189	ovaries	no	open flowers	6.57791
SRR3384922	fruit	no	1 week after full bloom	4.46766
SRR3384921	fruit	no	2 week after full bloom	2.68081
SRR3384920	fruit	no	3 week after full bloom	3.47132
SRR3384919	fruit	no	4 week after full bloom	3.9339
SRR3384923	fruit	no	5 week after full bloom	2.92783
SRR3384918	fruit	no	6 week after full bloom	2.30865
SRR3384917	fruit	no	8 week after full bloom	2.48349
SRR3384916	fruit	no	10 week after full bloom	2.88665
SRR3384915	fruit	no	12 week after full bloom	3.36522
SRR3384914	fruit	no	14 week after full bloom	3.75092
SRR3384913	fruit	no	16 week after full bloom	3.21306
SRR3384912	fruit	no	18 week after full bloom	2.96144
SRR3384911	fruit	no	19 week after full bloom	3.25352
SRR3384910	fruit	no	20 week after full bloom	2.91133
SRR768128	whole fruit	no	25 days post anthesis	5.43766
SRR768129	whole fruit	no	35 days post anthesis	4.81561
SRR768130	whole fruit	no	60 days post anthesis	3.44483
SRR768131	whole fruit	no	87 days post anthesis	3.56531
SRR7343308	immature fruit flesh	no	immature	3.72908
SRR7343309	immature fruit flesh	no	immature	3.14837
SRR6320494	ripe fruit flesh	no	mature	1.92244
SRR5405143	ripe fruit peel	no	mature	4.0013
SRR6320572	ripe fruit peel	no	mature	1.43029
SRR7403504	fruit	uninfected	mature	4.8546
SRR7403506	fruit	uninfected	mature	4.13103
SRR7403507	fruit	uninfected	mature	4.0254
SRR7403500	fruit	infected with penicillium expansum	mature	3.83379
SRR7403501	fruit	infected with penicillium expansum	mature	4.65485
SRR7403508	fruit	infected with penicillium expansum	mature	4.10134
SRR7403502	fruit	infected with penicillium expansum	mature	5.65003
SRR7403503	fruit	infected with penicillium expansum	mature	5.21593
SRR7403505	fruit	infected with penicillium expansum	mature	4.63061
SRR1613973	Central seeds	no	20DAPF	4.35018
SRR1613974	Central seeds	no	20DAPF	4.64241
SRR1613975	Central seeds	no	20DAPF	4.53098
SRR1613976	Lateral seeds	no	20DAPF	4.71621
SRR1613977	Lateral seeds	no	20DAPF	4.14363
SRR1613978	Lateral seeds	no	20DAPF	4.71344
SRR3744786	stem	no	mature	4.94987
SRR3744787	stem	no	mature	4.80842
SRR3744772	stem	no	mature	5.32383
SRX765691	seedling shoot apex	no	4-6 week old seedling	11.6778
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.8387
SRR1089478	leaf	Virus-free	plantlets	4.1096
SRR1089477	leaf	ASGV-infected	plantlets	4.41942
SRR767660	leaf	uninfected	fully developed	4.54788
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0.298668
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.55407
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.44785
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.30305
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	9.17846
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	5.67774
SRR6308182	young leaf	no	immature leaves	15.9005
SRR3744769	leaf	no	mature	4.21684
SRR3744770	leaf	no	mature	4.07614
SRR3744771	leaf	no	mature	4.13139
SRR5405145	leaf	no	mature	1.66224
SRR6320561	leaf	no	mature	3.18376