Gene detail

Detail information of MD02G1086200 Annotation

Gene ID	Annotation
MD02G1086200	nuclear factor Y

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1086200	mRNA	Chr02	6760401	6763923	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	NF-YA

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.7G203500.1.p	1	"nuclear factor Y, subunit A3"
Rosa multiflora	Rmu_sc0006198.1_g000014.1	1	-
Rosa multiflora	Rmu_sc0002193.1_g000009.1	1	-
Rubus occidentalis	Ro01_G02956	1	-
Fragaria vesca	mrna12709.1	1	"nuclear factor Y, subunit A3"
Vitis vinifera	GSVIVT01015120001	1	"nuclear factor Y, subunit A3"
Solanum lycopersicum	Solyc12g009050.1.1	1	"nuclear factor Y, subunit A3"
Populus trichocarpa	Potri.006G145100.2	1	"nuclear factor Y, subunit A3"
Populus trichocarpa	Potri.018G064700.1	0.635	"nuclear factor Y, subunit A3"
Nicotiana benthamiana	Niben101Scf02790g03007.1	1	Nuclear transcription factor Y subunit A-8
Nicotiana benthamiana	Niben101Scf13387g00028.1	0.875	Nuclear transcription factor Y subunit A-3
Oryza sativa	LOC_Os03g07880.1	1	"nuclear transcription factor Y subunit, putative, expressed"
Oryza sativa	LOC_Os03g29760.3	1	"nuclear transcription factor Y subunit, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0016602	CCAAT-binding factor complex	cellular component
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function

KEGG

KO	Description	Enzyme
K08064	"nuclear transcription factor Y, alpha"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.988306
SRR5252888	dormant buds	no	dormant buds(0 month)	18.374
SRR5252889	dormant buds	no	dormant buds(0 month)	21.5105
SRR5252886	dormant buds	no	dormant buds(1 months)	20.3766
SRR5252887	dormant buds	no	dormant buds(1 months)	16.9313
SRR5252884	dormant buds	no	dormant buds(2 months)	15.4061
SRR5252882	dormant buds	no	dormant buds(3 months)	11.5623
SRR5252883	dormant buds	no	dormant buds(3 months)	9.27755
SRR5252880	dormant buds	no	dormant buds(4 months)	4.19611
SRR5252881	dormant buds	no	dormant buds(4 months)	4.48285
SRR5252878	bud break	no	bud break	5.85123
SRR5252879	bud break	no	bud break	5.15595
SRR3744766	flower	no	mature	3.79956
SRR3744767	flower	no	mature	2.959
SRR3744768	flower	no	mature	3.43551
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0.357556
SRR6308193	receptacles	no	open flowers	0.427736
SRR6308189	ovaries	no	open flowers	0.347632
SRR3384922	fruit	no	1 week after full bloom	4.37894
SRR3384921	fruit	no	2 week after full bloom	3.56826
SRR3384920	fruit	no	3 week after full bloom	4.03291
SRR3384919	fruit	no	4 week after full bloom	3.59584
SRR3384923	fruit	no	5 week after full bloom	2.88401
SRR3384918	fruit	no	6 week after full bloom	3.99019
SRR3384917	fruit	no	8 week after full bloom	2.51622
SRR3384916	fruit	no	10 week after full bloom	1.63439
SRR3384915	fruit	no	12 week after full bloom	0.814227
SRR3384914	fruit	no	14 week after full bloom	0.789684
SRR3384913	fruit	no	16 week after full bloom	0.52319
SRR3384912	fruit	no	18 week after full bloom	0.92742
SRR3384911	fruit	no	19 week after full bloom	0.941828
SRR3384910	fruit	no	20 week after full bloom	0.819361
SRR768128	whole fruit	no	25 days post anthesis	2.251
SRR768129	whole fruit	no	35 days post anthesis	5.13903
SRR768130	whole fruit	no	60 days post anthesis	7.19823
SRR768131	whole fruit	no	87 days post anthesis	1.72396
SRR7343308	immature fruit flesh	no	immature	3.48767
SRR7343309	immature fruit flesh	no	immature	5.79997
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	1.13523
SRR6320572	ripe fruit peel	no	mature	2.17315
SRR7403504	fruit	uninfected	mature	0.819733
SRR7403506	fruit	uninfected	mature	0.837064
SRR7403507	fruit	uninfected	mature	0.685429
SRR7403500	fruit	infected with penicillium expansum	mature	0.141243
SRR7403501	fruit	infected with penicillium expansum	mature	0.1048
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.116822
SRR7403503	fruit	infected with penicillium expansum	mature	0.260962
SRR7403505	fruit	infected with penicillium expansum	mature	0.0586433
SRR1613973	Central seeds	no	20DAPF	0.705139
SRR1613974	Central seeds	no	20DAPF	0.706486
SRR1613975	Central seeds	no	20DAPF	0.808439
SRR1613976	Lateral seeds	no	20DAPF	0.60535
SRR1613977	Lateral seeds	no	20DAPF	0.87804
SRR1613978	Lateral seeds	no	20DAPF	0.691306
SRR3744786	stem	no	mature	12.9251
SRR3744787	stem	no	mature	14.1946
SRR3744772	stem	no	mature	13.8899
SRX765691	seedling shoot apex	no	4-6 week old seedling	13.9917
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.88829
SRR1089478	leaf	Virus-free	plantlets	17.4105
SRR1089477	leaf	ASGV-infected	plantlets	14.2392
SRR767660	leaf	uninfected	fully developed	8.92672
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0.605052
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	6.04281
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	6.19967
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.99669
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	8.86172
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	5.50723
SRR6308182	young leaf	no	immature leaves	9.7595
SRR3744769	leaf	no	mature	11.5033
SRR3744770	leaf	no	mature	12.3205
SRR3744771	leaf	no	mature	12.5857
SRR5405145	leaf	no	mature	13.6411
SRR6320561	leaf	no	mature	6.07823