Gene detail

Detail information of MD02G1089800 Annotation

Gene ID	Annotation
MD02G1089800	germin 3

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0227

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1089800	mRNA	Chr02	7131941	7132573	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Vitis vinifera	GSVIVT01016761001	1	germin 3
Vitis vinifera	GSVIVT01028594001	1	germin 3
Vitis vinifera	GSVIVT01028588001	1	germin 3

Gene Ontology

GO term	Description	Category
GO:0030145	manganese ion binding	molecular_function
GO:0045735	nutrient reservoir activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00190.18	Cupin_1	54	199	1.70E-35

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0
SRR5252888	dormant buds	no	dormant buds(0 month)	1.05707
SRR5252889	dormant buds	no	dormant buds(0 month)	2.6532
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.237854
SRR5252884	dormant buds	no	dormant buds(2 months)	1.13956
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0.830268
SRR5252880	dormant buds	no	dormant buds(4 months)	0.760426
SRR5252881	dormant buds	no	dormant buds(4 months)	0.844042
SRR5252878	bud break	no	bud break	0.378704
SRR5252879	bud break	no	bud break	1.04985
SRR3744766	flower	no	mature	3.01945
SRR3744767	flower	no	mature	2.44933
SRR3744768	flower	no	mature	2.53195
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.15268
SRR6308192	pollen	no	open flowers	2.22061
SRR6308191	petals	no	open flowers	0.638602
SRR6308194	sepals	no	open flowers	0.619408
SRR6308193	receptacles	no	open flowers	1.481
SRR6308189	ovaries	no	open flowers	4.80151
SRR3384922	fruit	no	1 week after full bloom	4.46043
SRR3384921	fruit	no	2 week after full bloom	2.12438
SRR3384920	fruit	no	3 week after full bloom	2.21065
SRR3384919	fruit	no	4 week after full bloom	0.785507
SRR3384923	fruit	no	5 week after full bloom	1.64342
SRR3384918	fruit	no	6 week after full bloom	0.997892
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0.623862
SRR3384915	fruit	no	12 week after full bloom	1.29176
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0.843207
SRR3384912	fruit	no	18 week after full bloom	0.989133
SRR3384911	fruit	no	19 week after full bloom	0.189739
SRR3384910	fruit	no	20 week after full bloom	0.14856
SRR768128	whole fruit	no	25 days post anthesis	2.55047
SRR768129	whole fruit	no	35 days post anthesis	8.40237
SRR768130	whole fruit	no	60 days post anthesis	0.391316
SRR768131	whole fruit	no	87 days post anthesis	0.294547
SRR7343308	immature fruit flesh	no	immature	5.2915
SRR7343309	immature fruit flesh	no	immature	5.29575
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0.123331
SRR7403500	fruit	infected with penicillium expansum	mature	73.193
SRR7403501	fruit	infected with penicillium expansum	mature	82.2169
SRR7403508	fruit	infected with penicillium expansum	mature	74.7666
SRR7403502	fruit	infected with penicillium expansum	mature	120.656
SRR7403503	fruit	infected with penicillium expansum	mature	112.694
SRR7403505	fruit	infected with penicillium expansum	mature	111.006
SRR1613973	Central seeds	no	20DAPF	0.261614
SRR1613974	Central seeds	no	20DAPF	0.539204
SRR1613975	Central seeds	no	20DAPF	0.53684
SRR1613976	Lateral seeds	no	20DAPF	0.770026
SRR1613977	Lateral seeds	no	20DAPF	0.625462
SRR1613978	Lateral seeds	no	20DAPF	1.00313
SRR3744786	stem	no	mature	19.6001
SRR3744787	stem	no	mature	20.56
SRR3744772	stem	no	mature	21.0169
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.235092
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.86573
SRR1089478	leaf	Virus-free	plantlets	12.8038
SRR1089477	leaf	ASGV-infected	plantlets	10.1932
SRR767660	leaf	uninfected	fully developed	3.0681
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.06895
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	17.6298
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	56.5138
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	14.6753
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	53.9425
SRR6308182	young leaf	no	immature leaves	0.828028
SRR3744769	leaf	no	mature	2.36097
SRR3744770	leaf	no	mature	3.66136
SRR3744771	leaf	no	mature	2.51555
SRR5405145	leaf	no	mature	4.24341
SRR6320561	leaf	no	mature	9.57456