| Gene ID | Annotation |
|---|---|
| MD02G1125000 | winged-helix DNA-binding transcription factor family protein |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| Co-expression network | CFinderM1067 | nucleosome binding histone deubiquitination OTU domain-containing protein 5 [EC:3.4.19.12] OTU histone binding regulation of mitotic cell cycle cysteine-type peptidase activity negative regulation of transcription gravitropism negative regulation of cellular process epsin la-related protein 1 phospholipid binding clathrin binding |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD02G1125000 | mRNA | Chr02 | 10160738 | 10164429 | + |
| CDS: |
| MD02G1125000 |
| Protein: |
| MD02G1125000 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G35890.1 | 1 | AtLARP1c;LARP1c|La related protein 1c |
| Pyrus communis | PCP016652.1 | 1 | - |
| Rosa multiflora | Rmu_sc0002776.1_g000023.1 | 1 | - |
| Rubus occidentalis | Ro01_G01225 | 1 | - |
| Fragaria vesca | mrna14555.1 | 1 | winged-helix DNA-binding transcription factor family protein |
| Vitis vinifera | GSVIVT01006333001 | 1 | winged-helix DNA-binding transcription factor family protein |
| Solanum lycopersicum | Solyc02g061960.2.1 | 1 | winged-helix DNA-binding transcription factor family protein |
| Solanum lycopersicum | Solyc04g081820.2.1 | 1 | winged-helix DNA-binding transcription factor family protein |
| Populus trichocarpa | Potri.005G109400.1 | 1 | winged-helix DNA-binding transcription factor family protein |
| Populus trichocarpa | Potri.007G063600.1 | 0.601 | winged-helix DNA-binding transcription factor family protein |
| Nicotiana benthamiana | Niben101Scf00592g05014.1 | 1 | LA-related protein 6 LA RNA-binding domain protein [Medicago truncatula] |
| Oryza sativa | LOC_Os09g36920.1 | 1 | "la domain containing protein, putative, expressed" |
| Oryza sativa | LOC_Os03g06070.1 | 1 | "la domain containing protein, putative, expressed" |
| Zea mays | GRMZM2G140339_P01 | 1 | - |
| Zea mays | GRMZM2G114107_P01 | 1 | - |
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
| KO | Description | Enzyme |
|---|---|---|
| K18757 | la-related protein 1 | - |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05383.13 | La | 392 | 447 | 1.40E-19 |
 |