Gene detail

Detail information of MD02G1130700 Annotation

Gene ID	Annotation
MD02G1130700	cold shock domain protein 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1130700	mRNA	Chr02	10523864	10524680	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	CSD

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G17870.1	1	ATCSP3;CSP3\|ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3;cold shock domain protein 3
Pyrus communis	PCP023858.1	1	-
Pyrus x bretschneideri	Pbr023331.1	1	-
Fragaria vesca	mrna14603.1	1	cold shock domain protein 1
Solanum lycopersicum	Solyc03g033500.2.1	1	cold shock domain protein 1
Populus trichocarpa	Potri.005G112800.1	1	cold shock domain protein 1
Populus trichocarpa	Potri.007G057100.1	0.724	cold shock domain protein 1
Oryza sativa	LOC_Os02g02870.1	1	"glycine-rich protein 2, putative, expressed"
Zea mays	GRMZM2G389768_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0008270	zinc ion binding	molecular_function

KEGG

KO	Description	Enzyme
K09250	cellular nucleic acid-binding protein	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00313.18	CSD	7	71	5.10E-23
PF00098.19	zf-CCHC	119	135	8.20E-08
PF00098.19	zf-CCHC	146	162	5.50E-05
PF00098.19	zf-CCHC	175	190	3.30E-06
PF00098.19	zf-CCHC	200	215	1.80E-06
PF00098.19	zf-CCHC	236	251	2.30E-07

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	5.05045
SRR5252888	dormant buds	no	dormant buds(0 month)	7.34383
SRR5252889	dormant buds	no	dormant buds(0 month)	6.66415
SRR5252886	dormant buds	no	dormant buds(1 months)	9.95079
SRR5252887	dormant buds	no	dormant buds(1 months)	9.74951
SRR5252884	dormant buds	no	dormant buds(2 months)	9.76422
SRR5252882	dormant buds	no	dormant buds(3 months)	9.52831
SRR5252883	dormant buds	no	dormant buds(3 months)	4.18193
SRR5252880	dormant buds	no	dormant buds(4 months)	12.6791
SRR5252881	dormant buds	no	dormant buds(4 months)	11.2879
SRR5252878	bud break	no	bud break	7.10367
SRR5252879	bud break	no	bud break	8.02308
SRR3744766	flower	no	mature	10.9408
SRR3744767	flower	no	mature	8.58
SRR3744768	flower	no	mature	12.3943
SRR6308190	stigmas	no	open flowers	18.6755
SRR6308181	styles	no	open flowers	12.6572
SRR6308188	filaments	no	open flowers	13.2924
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	10.3527
SRR6308192	pollen	no	open flowers	64.1284
SRR6308191	petals	no	open flowers	3.61771
SRR6308194	sepals	no	open flowers	7.01557
SRR6308193	receptacles	no	open flowers	11.7102
SRR6308189	ovaries	no	open flowers	11.062
SRR3384922	fruit	no	1 week after full bloom	23.2982
SRR3384921	fruit	no	2 week after full bloom	14.3533
SRR3384920	fruit	no	3 week after full bloom	15.355
SRR3384919	fruit	no	4 week after full bloom	14.2948
SRR3384923	fruit	no	5 week after full bloom	16.0848
SRR3384918	fruit	no	6 week after full bloom	18.5989
SRR3384917	fruit	no	8 week after full bloom	27.5191
SRR3384916	fruit	no	10 week after full bloom	14.4082
SRR3384915	fruit	no	12 week after full bloom	9.35695
SRR3384914	fruit	no	14 week after full bloom	14.1718
SRR3384913	fruit	no	16 week after full bloom	25.0379
SRR3384912	fruit	no	18 week after full bloom	14.4279
SRR3384911	fruit	no	19 week after full bloom	22.5362
SRR3384910	fruit	no	20 week after full bloom	36.8383
SRR768128	whole fruit	no	25 days post anthesis	7.56268
SRR768129	whole fruit	no	35 days post anthesis	14.3301
SRR768130	whole fruit	no	60 days post anthesis	23.4797
SRR768131	whole fruit	no	87 days post anthesis	22.811
SRR7343308	immature fruit flesh	no	immature	19.8128
SRR7343309	immature fruit flesh	no	immature	16.1364
SRR6320494	ripe fruit flesh	no	mature	19.3744
SRR5405143	ripe fruit peel	no	mature	1.23878
SRR6320572	ripe fruit peel	no	mature	56.0861
SRR7403504	fruit	uninfected	mature	13.3614
SRR7403506	fruit	uninfected	mature	11.2191
SRR7403507	fruit	uninfected	mature	9.28155
SRR7403500	fruit	infected with penicillium expansum	mature	5.48988
SRR7403501	fruit	infected with penicillium expansum	mature	3.94202
SRR7403508	fruit	infected with penicillium expansum	mature	4.92574
SRR7403502	fruit	infected with penicillium expansum	mature	7.32368
SRR7403503	fruit	infected with penicillium expansum	mature	4.41718
SRR7403505	fruit	infected with penicillium expansum	mature	6.76458
SRR1613973	Central seeds	no	20DAPF	58.7714
SRR1613974	Central seeds	no	20DAPF	53.9874
SRR1613975	Central seeds	no	20DAPF	61.8545
SRR1613976	Lateral seeds	no	20DAPF	55.6681
SRR1613977	Lateral seeds	no	20DAPF	65.221
SRR1613978	Lateral seeds	no	20DAPF	62.8318
SRR3744786	stem	no	mature	13.7819
SRR3744787	stem	no	mature	14.4706
SRR3744772	stem	no	mature	12.4611
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.1229
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.045
SRR1089478	leaf	Virus-free	plantlets	8.72566
SRR1089477	leaf	ASGV-infected	plantlets	6.7684
SRR767660	leaf	uninfected	fully developed	12.1819
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	18.4882
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	12.7993
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	21.6097
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	14.5035
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	10.7229
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	8.83629
SRR6308182	young leaf	no	immature leaves	8.79995
SRR3744769	leaf	no	mature	8.1101
SRR3744770	leaf	no	mature	10.4077
SRR3744771	leaf	no	mature	7.84541
SRR5405145	leaf	no	mature	1.26711
SRR6320561	leaf	no	mature	4.90382