Gene detail

Detail information of MD02G1136500 Annotation

Gene ID	Annotation
MD02G1136500	K-box region and MADS-box transcription factor family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0168	specification of floral organ identity meristem development petal development anthocyanin-containing compound biosynthetic process plastoglobule gastric triacylglycerol lipase [EC:3.1.1.3] cystinosin stamen development plant-type cell wall modification pollen tube growth plant ovule development translation release factor activity protein dimerization activity translational termination

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1136500	mRNA	Chr02	11386989	11389684	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	MIKC
Epigenetic Regulators	FLCP

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G54340.1	1	AP3;ATAP3\|APETALA 3;
Prunus persica	Prupe.7G164100.2.p	1	K-box region and MADS-box transcription factor family protein
Prunus persica	Prupe.7G164100.1.p	1	K-box region and MADS-box transcription factor family protein
Pyrus communis	PCP002673.1	1	-
Pyrus x bretschneideri	Pbr040541.1	1	-
Fragaria vesca	mrna14896.1	1	K-box region and MADS-box transcription factor family protein
Vitis vinifera	GSVIVT01009815001	1	K-box region and MADS-box transcription factor family protein
Populus trichocarpa	Potri.005G118000.1	1	K-box region and MADS-box transcription factor family protein
Nicotiana benthamiana	Niben101Scf01433g03011.1	1	MADS-box transcription factor 16
Oryza sativa	LOC_Os06g49840.2	1	"OsMADS16 - MADS-box family gene with MIKCc type-box, expressed"
Zea mays	GRMZM2G139073_P01	1	Silky1

Gene Ontology

GO term	Description	Category
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0005634	nucleus	cellular component
GO:0003677	DNA binding	molecular_function
GO:0046983	protein dimerization activity	molecular_function

KEGG

KO	Description	Enzyme
K09264	"MADS-box transcription factor, plant"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00319.14	SRF-TF	11	57	4.10E-23

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.0700887
SRR5252888	dormant buds	no	dormant buds(0 month)	1.05923
SRR5252889	dormant buds	no	dormant buds(0 month)	1.96329
SRR5252886	dormant buds	no	dormant buds(1 months)	16.8641
SRR5252887	dormant buds	no	dormant buds(1 months)	1.43004
SRR5252884	dormant buds	no	dormant buds(2 months)	8.2216
SRR5252882	dormant buds	no	dormant buds(3 months)	14.9646
SRR5252883	dormant buds	no	dormant buds(3 months)	0.748769
SRR5252880	dormant buds	no	dormant buds(4 months)	1.21917
SRR5252881	dormant buds	no	dormant buds(4 months)	0.592037
SRR5252878	bud break	no	bud break	3.18761
SRR5252879	bud break	no	bud break	14.4755
SRR3744766	flower	no	mature	65.7948
SRR3744767	flower	no	mature	63.792
SRR3744768	flower	no	mature	63.5793
SRR6308190	stigmas	no	open flowers	3.37328
SRR6308181	styles	no	open flowers	4.65728
SRR6308188	filaments	no	open flowers	162.271
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	211.995
SRR6308192	pollen	no	open flowers	20.1205
SRR6308191	petals	no	open flowers	197.114
SRR6308194	sepals	no	open flowers	5.41103
SRR6308193	receptacles	no	open flowers	21.9854
SRR6308189	ovaries	no	open flowers	1.75256
SRR3384922	fruit	no	1 week after full bloom	4.36047
SRR3384921	fruit	no	2 week after full bloom	3.01767
SRR3384920	fruit	no	3 week after full bloom	0.340655
SRR3384919	fruit	no	4 week after full bloom	0.377658
SRR3384923	fruit	no	5 week after full bloom	0.299291
SRR3384918	fruit	no	6 week after full bloom	0.799614
SRR3384917	fruit	no	8 week after full bloom	0.288609
SRR3384916	fruit	no	10 week after full bloom	0.124976
SRR3384915	fruit	no	12 week after full bloom	0.073935
SRR3384914	fruit	no	14 week after full bloom	0.143413
SRR3384913	fruit	no	16 week after full bloom	0.0844581
SRR3384912	fruit	no	18 week after full bloom	0.0792596
SRR3384911	fruit	no	19 week after full bloom	0.0760193
SRR3384910	fruit	no	20 week after full bloom	0.119042
SRR768128	whole fruit	no	25 days post anthesis	1.7181
SRR768129	whole fruit	no	35 days post anthesis	1.50938
SRR768130	whole fruit	no	60 days post anthesis	0.474492
SRR768131	whole fruit	no	87 days post anthesis	0.238103
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0.421848
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.236379
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.0792925
SRR7403506	fruit	uninfected	mature	0.0837609
SRR7403507	fruit	uninfected	mature	0.198904
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.106383
SRR1613974	Central seeds	no	20DAPF	0.0730878
SRR1613975	Central seeds	no	20DAPF	0.198456
SRR1613976	Lateral seeds	no	20DAPF	0.0313125
SRR1613977	Lateral seeds	no	20DAPF	0.121114
SRR1613978	Lateral seeds	no	20DAPF	0.0185415
SRR3744786	stem	no	mature	2.18598
SRR3744787	stem	no	mature	2.26192
SRR3744772	stem	no	mature	2.19057
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.20659
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.67478
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0.212601
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.177189
SRR6308182	young leaf	no	immature leaves	1.12141
SRR3744769	leaf	no	mature	0.169026
SRR3744770	leaf	no	mature	0.785036
SRR3744771	leaf	no	mature	0.492524
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0