Gene detail

Detail information of MD02G1137600 Annotation

Gene ID	Annotation
MD02G1137600	Ribosomal RNA adenine dimethylase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1137600	mRNA	Chr02	11503650	11504898	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G66360.2	1	DIM1B\|adenosine dimethyl transferase 1B
Arabidopsis thaliana	AT5G66360.1	0.795	DIM1B\|adenosine dimethyl transferase 1B
Prunus persica	Prupe.7G163000.1.p	1	Ribosomal RNA adenine dimethylase family protein
Pyrus communis	PCP026229.1	1	-
Rosa multiflora	Rmu_sc0018554.1_g000006.1	1	-
Rubus occidentalis	Ro01_G01131	1	-
Fragaria vesca	mrna14905.1	1	Ribosomal RNA adenine dimethylase family protein
Vitis vinifera	GSVIVT01018854001	1	Ribosomal RNA adenine dimethylase family protein
Solanum lycopersicum	Solyc02g084730.2.1	1	Ribosomal RNA adenine dimethylase family protein
Populus trichocarpa	Potri.018G018900.1	1	Ribosomal RNA adenine dimethylase family protein
Nicotiana benthamiana	Niben101Scf05764g04016.1	1	Ribosomal RNA small subunit methyltransferase A
Oryza sativa	LOC_Os07g32550.1	1	"dimethyladenosine transferase, putative, expressed"
Zea mays	GRMZM2G064759_P01	1	Ribosomal RNA adenine dimethylase family protein

Gene Ontology

GO term	Description	Category
GO:0016433	rRNA (adenine) methyltransferase activity	molecular_function
GO:0000154	rRNA modification	biological_process

KEGG

KO	Description	Enzyme
K14191	18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase	EC:2.1.1.183

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00398.16	RrnaAD	52	278	8.20E-61

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.02526
SRR5252888	dormant buds	no	dormant buds(0 month)	0.953219
SRR5252889	dormant buds	no	dormant buds(0 month)	0.368084
SRR5252886	dormant buds	no	dormant buds(1 months)	0.80725
SRR5252887	dormant buds	no	dormant buds(1 months)	0.214487
SRR5252884	dormant buds	no	dormant buds(2 months)	0.85634
SRR5252882	dormant buds	no	dormant buds(3 months)	0.515317
SRR5252883	dormant buds	no	dormant buds(3 months)	0.280763
SRR5252880	dormant buds	no	dormant buds(4 months)	1.02858
SRR5252881	dormant buds	no	dormant buds(4 months)	1.14168
SRR5252878	bud break	no	bud break	1.7075
SRR5252879	bud break	no	bud break	1.42007
SRR3744766	flower	no	mature	0.327049
SRR3744767	flower	no	mature	0.191254
SRR3744768	flower	no	mature	0.257829
SRR6308190	stigmas	no	open flowers	0.270237
SRR6308181	styles	no	open flowers	0.232035
SRR6308188	filaments	no	open flowers	0.349449
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.298073
SRR6308194	sepals	no	open flowers	0.144468
SRR6308193	receptacles	no	open flowers	0.115197
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.080414
SRR3384921	fruit	no	2 week after full bloom	0.609302
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0.283227
SRR3384923	fruit	no	5 week after full bloom	0.40402
SRR3384918	fruit	no	6 week after full bloom	0.0749596
SRR3384917	fruit	no	8 week after full bloom	0.216445
SRR3384916	fruit	no	10 week after full bloom	0.14059
SRR3384915	fruit	no	12 week after full bloom	0.249517
SRR3384914	fruit	no	14 week after full bloom	0.483991
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0.089162
SRR3384911	fruit	no	19 week after full bloom	0.256551
SRR3384910	fruit	no	20 week after full bloom	0.200872
SRR768128	whole fruit	no	25 days post anthesis	0.869099
SRR768129	whole fruit	no	35 days post anthesis	0.106044
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0.475491
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0.45231
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0.779461
SRR7403504	fruit	uninfected	mature	0.22288
SRR7403506	fruit	uninfected	mature	0.800495
SRR7403507	fruit	uninfected	mature	0.223636
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.369747
SRR7403502	fruit	infected with penicillium expansum	mature	0.0952893
SRR7403503	fruit	infected with penicillium expansum	mature	0.319292
SRR7403505	fruit	infected with penicillium expansum	mature	0.382673
SRR1613973	Central seeds	no	20DAPF	2.00802
SRR1613974	Central seeds	no	20DAPF	1.52737
SRR1613975	Central seeds	no	20DAPF	2.02905
SRR1613976	Lateral seeds	no	20DAPF	2.04048
SRR1613977	Lateral seeds	no	20DAPF	2.14999
SRR1613978	Lateral seeds	no	20DAPF	1.89572
SRR3744786	stem	no	mature	0.448705
SRR3744787	stem	no	mature	0.444196
SRR3744772	stem	no	mature	0.332265
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.723439
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.724057
SRR1089478	leaf	Virus-free	plantlets	1.07777
SRR1089477	leaf	ASGV-infected	plantlets	0.238861
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.786383
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.810066
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.70531
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.199051
SRR6308182	young leaf	no	immature leaves	0.483581
SRR3744769	leaf	no	mature	0.266983
SRR3744770	leaf	no	mature	0.201573
SRR3744771	leaf	no	mature	0.238601
SRR5405145	leaf	no	mature	0.549504
SRR6320561	leaf	no	mature	0.603319