Gene detail

Detail information of MD02G1145800 Annotation

Gene ID	Annotation
MD02G1145800	RAD-like 6

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1145800	mRNA	Chr02	12044950	12046311	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB-related

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.7G156100.1.p	1	RAD-like 6
Pyrus communis	PCP016299.1	1	-
Pyrus x bretschneideri	Pbr014330.1	1	-
Rosa multiflora	Rmu_sc0006314.1_g000020.1	1	-
Rubus occidentalis	Ro01_G01052	1	-
Vitis vinifera	GSVIVT01018944001	1	RAD-like 6
Solanum lycopersicum	Solyc01g109690.1.1	1	RAD-like 6
Populus trichocarpa	Potri.005G122200.2	1	RAD-like 6
Nicotiana benthamiana	Niben101Scf03660g01001.1	1	Transcription factor RADIALIS
Oryza sativa	LOC_Os07g26150.1	1	"MYB family transcription factor, putative, expressed"
Oryza sativa	LOC_Os01g44390.1	1	"MYB family transcription factor, putative, expressed"
Oryza sativa	LOC_Os05g50340.1	1	"MYB family transcription factor, putative, expressed"
Zea mays	GRMZM2G150260_P01	1	DNA binding protein
Zea mays	GRMZM2G114503_P01	1	Putative MYB DNA-binding domain superfamily protein; RADIALIS

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0003682	chromatin binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.27	Myb_DNA-binding	16	60	1.30E-08

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	10.8254
SRR5252888	dormant buds	no	dormant buds(0 month)	4.03716
SRR5252889	dormant buds	no	dormant buds(0 month)	5.56766
SRR5252886	dormant buds	no	dormant buds(1 months)	12.2105
SRR5252887	dormant buds	no	dormant buds(1 months)	9.60325
SRR5252884	dormant buds	no	dormant buds(2 months)	35.6468
SRR5252882	dormant buds	no	dormant buds(3 months)	14.5501
SRR5252883	dormant buds	no	dormant buds(3 months)	11.7779
SRR5252880	dormant buds	no	dormant buds(4 months)	2.48934
SRR5252881	dormant buds	no	dormant buds(4 months)	1.61179
SRR5252878	bud break	no	bud break	0.826485
SRR5252879	bud break	no	bud break	2.97857
SRR3744766	flower	no	mature	1.38211
SRR3744767	flower	no	mature	0.898289
SRR3744768	flower	no	mature	1.69503
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0.26885
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	1.7323
SRR6308194	sepals	no	open flowers	3.02475
SRR6308193	receptacles	no	open flowers	3.74963
SRR6308189	ovaries	no	open flowers	0.434019
SRR3384922	fruit	no	1 week after full bloom	3.30993
SRR3384921	fruit	no	2 week after full bloom	1.47527
SRR3384920	fruit	no	3 week after full bloom	0.185571
SRR3384919	fruit	no	4 week after full bloom	0.685761
SRR3384923	fruit	no	5 week after full bloom	2.60861
SRR3384918	fruit	no	6 week after full bloom	1.81495
SRR3384917	fruit	no	8 week after full bloom	1.57219
SRR3384916	fruit	no	10 week after full bloom	0.851004
SRR3384915	fruit	no	12 week after full bloom	0.40276
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0.230042
SRR3384912	fruit	no	18 week after full bloom	0.215883
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.463259
SRR768129	whole fruit	no	35 days post anthesis	1.27182
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0.963009
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0
SRR1613975	Central seeds	no	20DAPF	0
SRR1613976	Lateral seeds	no	20DAPF	0
SRR1613977	Lateral seeds	no	20DAPF	0.0324296
SRR1613978	Lateral seeds	no	20DAPF	0
SRR3744786	stem	no	mature	1.04348
SRR3744787	stem	no	mature	1.22394
SRR3744772	stem	no	mature	1.59623
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.61236
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	11.0714
SRR1089478	leaf	Virus-free	plantlets	2.56804
SRR1089477	leaf	ASGV-infected	plantlets	1.99201
SRR767660	leaf	uninfected	fully developed	23.3762
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	7.9122
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.40645
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	100.753
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.33269
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.64851
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	11.8387
SRR6308182	young leaf	no	immature leaves	2.02121
SRR3744769	leaf	no	mature	0.863571
SRR3744770	leaf	no	mature	0.516473
SRR3744771	leaf	no	mature	0.5131
SRR5405145	leaf	no	mature	17.8448
SRR6320561	leaf	no	mature	54.8672