Gene detail

Detail information of MD02G1151400 Annotation

Gene ID	Annotation
MD02G1151400	SIN-like family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0841	DNA-directed RNA polymerase III subunit RPC5 pre-mRNA-processing factor SLU7 (1->3)-beta-D-glucan binding phosphatidylinositol-3 single-stranded RNA binding

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1151400	mRNA	Chr02	12486313	12499303	-

Sequences

CDS:

MD02G1151400

CCCCTAAAAAGAACCGCGCACGAAAGCCCCCACTCTCACAGCTCCGTTCTCCACCACCTCTCACCGGAACAAACAGAAACCACAGAGTAGCCGACGATGAACCTCGAAGACCTCGATGCGACCAGCCAGGCCCCTTCCCGGCCCAACCGGTTTGTGCCCCGGTCCTCCAAGGCCAAGCCTAAACCCAAATCCGAACCCGTCGCCAAACAAGAACCGGTCCCGAAGTCCGAGCCAGAGCTCAAACCTTCACGAGAAGAACTGGACGCCCGGATTGTGAAGAAGAAAGACGAAGAAGGAAGCGCGCCGAAGGCCGAAGACTCAAATGGCGGTTTGAAAACCGAAAACGGCGACGTATCGAAAGAGGATGATCCTATGGAAGAAGACGAACTGGAAGACGAGGTCGTGCGGGAAATCGACGTCTTCTTCAATCCGAAAATCGATGACAACTCTAAGTTGTATGTATTGCAATATCCTCTGAGGCCGTGGTGGCGGCCTTACGAGTTGGAGAGCCGGTGCGAGGAGGTGAGGCTGAACCCCGCCACTTCAGAAATGGAGATTGATTTGTCTCTCGATCGGGACCCGAAGAATTTCGATGAAGATTGCGCTAGTAGATTGAAAATGACAAAGCAGACTTTGTCTACAACATGGAAGCCGCCTGGCACAAGTGGCTATGCTGTTGGTGTTTTGATGGGCAATAAGTTACACTTGAATCCTGTTCACGCGGTTGTACAGCTTCGACCCTCATTGGATCATTTGAACTCTGGTGGCTCTAAAAGGAAGAACAGTGTCAAAGGGGATGCAGAAGTTACAGTTAAGTTGGAAGACTCTGGACAAGAAAAATCCATTGGTCCATCAAAGATGCAGAACAAGCGGATGGAGTCTTCAACTGAGAAAAAAATTGAAGATGAAGAGAGTTGGGTTCCACTTCGGTATCATAGCTCAGAAAGTGACTTCTCGGCCAGATATTTACGGAAGATGGTGGGGCAAGAAAGTTCACCTATACAATTTACAATGAGCCCGCATGACTATGTTGACTCCTTATGTCCTAGAACGTGCAAAGGTTCTTCAAGAAGGTCTCTGCTTTCCCTGCCTCTGGAAGAGCGTATCAAGAAGTTGATTGTTGAGGAACCTGTAGCACGCCGGTTCAGTGATCTTAAGAAGTACTTTGCTCCCGATCACACCGCGGAAGAACTTCTGGATGTTCTTCAGAAGCATGCTCAGTTGTTGCTGTCCTCTGGTCTTTGGGTTCCAAAAACCTTATTATTATATCCAAATAAAGATGATAAAGGCTTGGATACAAATCATATATCAACTAAAGATCATAAAGATCGGCAGACAGCTAGAAATTACATCCTGAATTTATTTCGGAAGAATCCTGTAATCAGTAATTCACAGCTAGACCTCCAAGAGGGCATTAGAACTCATGTGTATGAATCCCTTAGAATGTTAGCTGTCTCAAGACCTTCCACTCAAGATTGGAAATTCAAAGAGCAACCAGATATGTCATTCATGGAACGCTACCCGGACATTGTTAAAACCCAAGAACAGAACTGGGACAGGATTGAAGAAAAGTTGAGGATAGCCTTTAAATCTAATACTGACCGTTATTTGAAGAGTGCTAGTATGACTACCACGCGTGGCAAACCACTGAATTCTGATAAAGGTACGACAAAAGCTACAAGTGAAGTTCACACTGGGGGAAGAACCATGTCAGATGAAACTCGAGCAGCTCTGCAAGAGGCTATAAAGGAGGTTTTTCAAGAACACAAGGTTTGCAACTTTCAACTGATACGTAGAGGATTAAGTGATCTGGCAGTCAGAACATCTACTCTTCCAAAGGTTGATCCTAGAAGTAAAAAAGTGACGGCTGCACAATATGGAGTTCAGGCTCCTCCACATGAGCTGCAGAAAGTAATAAGTGAAATTGCGATAGACATACATGGTTCGTATGTCTTGAAATCATCACCAGATCACCCAGAGCATGACAAATTGAGGAAGGTTGTTATGGATCTTCTATGTGCAAAAGGACCTAATGCTAAGCTTAAAAGGGGTGAGGTTTCTGAAGCAACTAAGATTTCTCTTGGGAAGGAATTCACTGCTAACGAATTCAGCAAGGTCATTAATGAGTTCTGCGTGTCCAGCGGTTCTTCATGGGTCTTAAAAAAGGGTGATGGCGGGAACTGAATTTTGGAAACGTGATGAAATTTATTCACGGTTTCACGGAAAGCAAGCTACCAGATTGATTTGTTCTTTCCTTTTCCAGTGAGTATATGGTCGTAGACTCGTAGTATAATACTAGAATCGTAGAATGATAGTTTTGTGCAGACACATACTTGACATGAAATTTTGTCGTCGTAAATCGTCGTTCTATTATCAATGAAAGAAGAAAAGATTACAATTTAA

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G49530.1	1	SIN-like family protein
Prunus persica	Prupe.7G151600.1.p	1	SIN-like family protein
Prunus persica	Prupe.7G151600.2.p	0.891	SIN-like family protein
Pyrus communis	PCP002716.1	1	-
Pyrus x bretschneideri	Pbr029707.1	1	-
Rosa multiflora	Rmu_sc0000157.1_g000006.1	1	-
Rubus occidentalis	Ro01_G01003	1	-
Rubus occidentalis	Ro05_G19374	0.741	-
Fragaria vesca	mrna29564.1	1	SIN-like family protein
Vitis vinifera	GSVIVT01018995001	1	SIN-like family protein
Solanum lycopersicum	Solyc08g078600.2.1	1	SIN-like family protein
Populus trichocarpa	Potri.007G028600.1	1	SIN-like family protein
Nicotiana benthamiana	Niben101Scf03693g06001.1	1	DNA-directed RNA polymerase III subunit RPC5
Oryza sativa	LOC_Os08g16780.2	1	"sin-like protein conserved region containing protein, expressed"
Zea mays	GRMZM2G155943_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	cellular component
GO:0003899	DNA-directed RNA polymerase activity	molecular_function

KEGG

KO	Description	Enzyme
K14721	DNA-directed RNA polymerase III subunit RPC5	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.77333
SRR5252888	dormant buds	no	dormant buds(0 month)	15.8758
SRR5252889	dormant buds	no	dormant buds(0 month)	13.9009
SRR5252886	dormant buds	no	dormant buds(1 months)	11.9889
SRR5252887	dormant buds	no	dormant buds(1 months)	13.6975
SRR5252884	dormant buds	no	dormant buds(2 months)	21.875
SRR5252882	dormant buds	no	dormant buds(3 months)	17.8576
SRR5252883	dormant buds	no	dormant buds(3 months)	17.5528
SRR5252880	dormant buds	no	dormant buds(4 months)	18.2585
SRR5252881	dormant buds	no	dormant buds(4 months)	16.2695
SRR5252878	bud break	no	bud break	9.20169
SRR5252879	bud break	no	bud break	6.70872
SRR3744766	flower	no	mature	6.47973
SRR3744767	flower	no	mature	6.09827
SRR3744768	flower	no	mature	5.53726
SRR6308190	stigmas	no	open flowers	5.70679
SRR6308181	styles	no	open flowers	5.31394
SRR6308188	filaments	no	open flowers	6.76409
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	8.31003
SRR6308192	pollen	no	open flowers	12.783
SRR6308191	petals	no	open flowers	8.93929
SRR6308194	sepals	no	open flowers	8.66263
SRR6308193	receptacles	no	open flowers	6.90914
SRR6308189	ovaries	no	open flowers	6.58698
SRR3384922	fruit	no	1 week after full bloom	4.29862
SRR3384921	fruit	no	2 week after full bloom	3.24971
SRR3384920	fruit	no	3 week after full bloom	2.56878
SRR3384919	fruit	no	4 week after full bloom	2.97397
SRR3384923	fruit	no	5 week after full bloom	3.51385
SRR3384918	fruit	no	6 week after full bloom	3.1802
SRR3384917	fruit	no	8 week after full bloom	3.39763
SRR3384916	fruit	no	10 week after full bloom	3.57875
SRR3384915	fruit	no	12 week after full bloom	3.42276
SRR3384914	fruit	no	14 week after full bloom	3.52493
SRR3384913	fruit	no	16 week after full bloom	5.32072
SRR3384912	fruit	no	18 week after full bloom	4.99322
SRR3384911	fruit	no	19 week after full bloom	5.95007
SRR3384910	fruit	no	20 week after full bloom	4.97122
SRR768128	whole fruit	no	25 days post anthesis	2.79655
SRR768129	whole fruit	no	35 days post anthesis	3.342
SRR768130	whole fruit	no	60 days post anthesis	3.33162
SRR768131	whole fruit	no	87 days post anthesis	5.6994
SRR7343308	immature fruit flesh	no	immature	5.84145
SRR7343309	immature fruit flesh	no	immature	4.62104
SRR6320494	ripe fruit flesh	no	mature	10.6379
SRR5405143	ripe fruit peel	no	mature	11.8941
SRR6320572	ripe fruit peel	no	mature	9.77027
SRR7403504	fruit	uninfected	mature	8.74219
SRR7403506	fruit	uninfected	mature	10.0562
SRR7403507	fruit	uninfected	mature	10.061
SRR7403500	fruit	infected with penicillium expansum	mature	10.8807
SRR7403501	fruit	infected with penicillium expansum	mature	10.619
SRR7403508	fruit	infected with penicillium expansum	mature	11.7449
SRR7403502	fruit	infected with penicillium expansum	mature	11.9993
SRR7403503	fruit	infected with penicillium expansum	mature	12.6778
SRR7403505	fruit	infected with penicillium expansum	mature	13.1052
SRR1613973	Central seeds	no	20DAPF	6.48197
SRR1613974	Central seeds	no	20DAPF	7.73535
SRR1613975	Central seeds	no	20DAPF	6.50302
SRR1613976	Lateral seeds	no	20DAPF	5.25794
SRR1613977	Lateral seeds	no	20DAPF	6.60089
SRR1613978	Lateral seeds	no	20DAPF	6.4849
SRR3744786	stem	no	mature	6.40143
SRR3744787	stem	no	mature	6.60786
SRR3744772	stem	no	mature	6.65211
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.86617
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.24321
SRR1089478	leaf	Virus-free	plantlets	2.76156
SRR1089477	leaf	ASGV-infected	plantlets	3.67219
SRR767660	leaf	uninfected	fully developed	2.20176
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	3.58808
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.61398
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.30459
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.11338
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.55179
SRR6308182	young leaf	no	immature leaves	5.76211
SRR3744769	leaf	no	mature	5.65808
SRR3744770	leaf	no	mature	6.72545
SRR3744771	leaf	no	mature	7.07729
SRR5405145	leaf	no	mature	5.4931
SRR6320561	leaf	no	mature	3.97213