Gene detail

Detail information of MD02G1152600 Annotation

Gene ID	Annotation
MD02G1152600	Small nuclear ribonucleoprotein family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0863	structural constituent of ribosome translation cytosolic large ribosomal subunit 5S rRNA binding ribosome biogenesis large subunit ribosomal protein L32e small subunit ribosomal protein S23e large subunit ribosomal protein L32 large subunit ribosomal protein L44e large subunit ribosomal protein L5e adaxial/abaxial pattern specification small nuclear ribonucleoprotein D2 root morphogenesis nucleocytoplasmic transport

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1152600	mRNA	Chr02	12623174	12625589	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G47640.3	1	Small nuclear ribonucleoprotein family protein
Arabidopsis thaliana	AT3G62840.2	1	Small nuclear ribonucleoprotein family protein
Arabidopsis thaliana	AT2G47640.2	1	Small nuclear ribonucleoprotein family protein
Arabidopsis thaliana	AT2G47640.1	0.778	Small nuclear ribonucleoprotein family protein
Arabidopsis thaliana	AT2G47640.4	0.778	Small nuclear ribonucleoprotein family protein
Arabidopsis thaliana	AT3G62840.1	0.778	Small nuclear ribonucleoprotein family protein
Prunus persica	Prupe.8G230200.1.p	1	Small nuclear ribonucleoprotein family protein
Pyrus communis	PCP020984.1	1	-
Pyrus x bretschneideri	Pbr017258.1	1	-
Rosa multiflora	Rmu_sc0009229.1_g000003.1	1	-
Rosa multiflora	Rmu_sc0004654.1_g000018.1	1	-
Rubus occidentalis	Ro05_G08661	1	-
Fragaria vesca	mrna08939.1	1	Small nuclear ribonucleoprotein family protein
Vitis vinifera	GSVIVT01011627001	1	Small nuclear ribonucleoprotein family protein
Populus trichocarpa	Potri.014G129100.1	1	Small nuclear ribonucleoprotein family protein
Populus trichocarpa	Potri.002G204300.2	1	Small nuclear ribonucleoprotein family protein
Nicotiana benthamiana	Niben101Scf09403g00005.1	1	Small nuclear ribonucleoprotein Sm D2
Nicotiana benthamiana	Niben101Scf14627g00001.1	0.9	Small nuclear ribonucleoprotein Sm D2
Oryza sativa	LOC_Os05g24970.1	1	"LSM domain containing protein, expressed"
Zea mays	GRMZM2G171372_P01	1	-
Zea mays	GRMZM2G076399_P01	1	Small nuclear ribonucleoprotein Sm D2; Small nuclear ribonucleoprotein Sm D2 isoform 1; Small nuclear ribonucleoprotein Sm D2 isoform 2; Small nuclear ribonucleoprotein Sm D2 isoform 3;
Zea mays	GRMZM2G166985_P01	0.947	Small nuclear ribonucleoprotein Sm D2; Small nuclear ribonucleoprotein Sm D2 isoform 1; Small nuclear ribonucleoprotein Sm D2 isoform 2;

Gene Ontology

GO term	Description	Category
GO:0008380	RNA splicing	biological_process
GO:0030532	small nuclear ribonucleoprotein complex	cellular component

KEGG

KO	Description	Enzyme
K11096	small nuclear ribonucleoprotein D2	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01423.18	LSM	28	102	1.90E-19

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	74.327
SRR5252888	dormant buds	no	dormant buds(0 month)	43.8892
SRR5252889	dormant buds	no	dormant buds(0 month)	44.278
SRR5252886	dormant buds	no	dormant buds(1 months)	48.8881
SRR5252887	dormant buds	no	dormant buds(1 months)	43.7732
SRR5252884	dormant buds	no	dormant buds(2 months)	56.834
SRR5252882	dormant buds	no	dormant buds(3 months)	55.2914
SRR5252883	dormant buds	no	dormant buds(3 months)	47.0504
SRR5252880	dormant buds	no	dormant buds(4 months)	53.1902
SRR5252881	dormant buds	no	dormant buds(4 months)	57.776
SRR5252878	bud break	no	bud break	38.8135
SRR5252879	bud break	no	bud break	89.2215
SRR3744766	flower	no	mature	30.6147
SRR3744767	flower	no	mature	27.0889
SRR3744768	flower	no	mature	28.6542
SRR6308190	stigmas	no	open flowers	24.8942
SRR6308181	styles	no	open flowers	24.3311
SRR6308188	filaments	no	open flowers	43.3941
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	12.2772
SRR6308192	pollen	no	open flowers	11.7614
SRR6308191	petals	no	open flowers	43.1931
SRR6308194	sepals	no	open flowers	38.3537
SRR6308193	receptacles	no	open flowers	65.6513
SRR6308189	ovaries	no	open flowers	44.8912
SRR3384922	fruit	no	1 week after full bloom	95.9516
SRR3384921	fruit	no	2 week after full bloom	69.3374
SRR3384920	fruit	no	3 week after full bloom	53.0396
SRR3384919	fruit	no	4 week after full bloom	43.2429
SRR3384923	fruit	no	5 week after full bloom	35.2009
SRR3384918	fruit	no	6 week after full bloom	36.4491
SRR3384917	fruit	no	8 week after full bloom	31.2506
SRR3384916	fruit	no	10 week after full bloom	27.5314
SRR3384915	fruit	no	12 week after full bloom	39.6143
SRR3384914	fruit	no	14 week after full bloom	27.9785
SRR3384913	fruit	no	16 week after full bloom	28.0661
SRR3384912	fruit	no	18 week after full bloom	29.002
SRR3384911	fruit	no	19 week after full bloom	20.5784
SRR3384910	fruit	no	20 week after full bloom	19.7793
SRR768128	whole fruit	no	25 days post anthesis	61.2711
SRR768129	whole fruit	no	35 days post anthesis	51.5149
SRR768130	whole fruit	no	60 days post anthesis	24.677
SRR768131	whole fruit	no	87 days post anthesis	16.1422
SRR7343308	immature fruit flesh	no	immature	20.5517
SRR7343309	immature fruit flesh	no	immature	29.2397
SRR6320494	ripe fruit flesh	no	mature	18.5982
SRR5405143	ripe fruit peel	no	mature	15.5849
SRR6320572	ripe fruit peel	no	mature	9.50088
SRR7403504	fruit	uninfected	mature	11.5779
SRR7403506	fruit	uninfected	mature	11.3735
SRR7403507	fruit	uninfected	mature	12.4866
SRR7403500	fruit	infected with penicillium expansum	mature	8.76745
SRR7403501	fruit	infected with penicillium expansum	mature	10.4651
SRR7403508	fruit	infected with penicillium expansum	mature	10.6027
SRR7403502	fruit	infected with penicillium expansum	mature	8.03978
SRR7403503	fruit	infected with penicillium expansum	mature	9.50802
SRR7403505	fruit	infected with penicillium expansum	mature	8.54656
SRR1613973	Central seeds	no	20DAPF	69.3089
SRR1613974	Central seeds	no	20DAPF	71.5335
SRR1613975	Central seeds	no	20DAPF	72.5078
SRR1613976	Lateral seeds	no	20DAPF	69.6619
SRR1613977	Lateral seeds	no	20DAPF	77.5834
SRR1613978	Lateral seeds	no	20DAPF	76.0481
SRR3744786	stem	no	mature	31.5097
SRR3744787	stem	no	mature	34.5616
SRR3744772	stem	no	mature	27.512
SRX765691	seedling shoot apex	no	4-6 week old seedling	64.719
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	69.6397
SRR1089478	leaf	Virus-free	plantlets	24.6006
SRR1089477	leaf	ASGV-infected	plantlets	22.8203
SRR767660	leaf	uninfected	fully developed	30.0486
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	11.9008
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	21.9841
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	23.2364
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	28.6542
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	35.1375
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	26.4801
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	22.2793
SRR6308182	young leaf	no	immature leaves	90.4977
SRR3744769	leaf	no	mature	28.6031
SRR3744770	leaf	no	mature	24.3061
SRR3744771	leaf	no	mature	27.9937
SRR5405145	leaf	no	mature	24.0931
SRR6320561	leaf	no	mature	25.3519