Gene detail

Detail information of MD02G1169900 Annotation

Gene ID	Annotation
MD02G1169900	methionine aminopeptidase 1D

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0098	proton-transporting V-type ATPase endoplasmic reticulum

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1169900	mRNA	Chr02	14686243	14693945	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G37040.1	1	MAP1D\|methionine aminopeptidase 1D
Prunus persica	Prupe.7G135200.1.p	1	methionine aminopeptidase 1D
Rosa multiflora	Rmu_sc0005160.1_g000008.1	1	-
Rubus occidentalis	Ro01_G29731	1	-
Vitis vinifera	GSVIVT01022146001	1	methionine aminopeptidase 1D
Solanum lycopersicum	Solyc02g090670.2.1	1	methionine aminopeptidase 1D
Populus trichocarpa	Potri.005G137400.1	1	methionine aminopeptidase 1D
Nicotiana benthamiana	Niben101Scf01469g01006.1	1	methionine aminopeptidase 1D LENGTH=350
Zea mays	GRMZM2G101438_P01	1	Methionine aminopeptidase

Gene Ontology

GO term	Description	Category
GO:0004177	aminopeptidase activity	molecular_function
GO:0009987	cellular process	biological_process
GO:0006508	proteolysis	biological_process
GO:0008235	metalloexopeptidase activity	molecular_function

KEGG

KO	Description	Enzyme
K01265	methionyl aminopeptidase	EC:3.4.11.18

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00557.20	Peptidase_M24	117	344	2.80E-56

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	19.6157
SRR5252888	dormant buds	no	dormant buds(0 month)	4.92216
SRR5252889	dormant buds	no	dormant buds(0 month)	5.59646
SRR5252886	dormant buds	no	dormant buds(1 months)	7.17894
SRR5252887	dormant buds	no	dormant buds(1 months)	5.66082
SRR5252884	dormant buds	no	dormant buds(2 months)	5.50281
SRR5252882	dormant buds	no	dormant buds(3 months)	5.1248
SRR5252883	dormant buds	no	dormant buds(3 months)	2.89956
SRR5252880	dormant buds	no	dormant buds(4 months)	4.6228
SRR5252881	dormant buds	no	dormant buds(4 months)	4.8036
SRR5252878	bud break	no	bud break	5.38819
SRR5252879	bud break	no	bud break	5.32311
SRR3744766	flower	no	mature	4.25747
SRR3744767	flower	no	mature	4.1015
SRR3744768	flower	no	mature	4.51462
SRR6308190	stigmas	no	open flowers	8.7045
SRR6308181	styles	no	open flowers	10.9965
SRR6308188	filaments	no	open flowers	6.07565
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	13.1694
SRR6308192	pollen	no	open flowers	49.9084
SRR6308191	petals	no	open flowers	5.71405
SRR6308194	sepals	no	open flowers	7.80305
SRR6308193	receptacles	no	open flowers	5.82167
SRR6308189	ovaries	no	open flowers	7.72308
SRR3384922	fruit	no	1 week after full bloom	4.93604
SRR3384921	fruit	no	2 week after full bloom	2.74638
SRR3384920	fruit	no	3 week after full bloom	3.5614
SRR3384919	fruit	no	4 week after full bloom	3.41206
SRR3384923	fruit	no	5 week after full bloom	4.94453
SRR3384918	fruit	no	6 week after full bloom	4.85924
SRR3384917	fruit	no	8 week after full bloom	4.84256
SRR3384916	fruit	no	10 week after full bloom	3.83098
SRR3384915	fruit	no	12 week after full bloom	4.43735
SRR3384914	fruit	no	14 week after full bloom	4.81263
SRR3384913	fruit	no	16 week after full bloom	3.5973
SRR3384912	fruit	no	18 week after full bloom	2.45518
SRR3384911	fruit	no	19 week after full bloom	5.10209
SRR3384910	fruit	no	20 week after full bloom	4.76302
SRR768128	whole fruit	no	25 days post anthesis	3.61103
SRR768129	whole fruit	no	35 days post anthesis	3.4774
SRR768130	whole fruit	no	60 days post anthesis	2.35253
SRR768131	whole fruit	no	87 days post anthesis	4.08047
SRR7343308	immature fruit flesh	no	immature	3.2697
SRR7343309	immature fruit flesh	no	immature	2.71855
SRR6320494	ripe fruit flesh	no	mature	7.30793
SRR5405143	ripe fruit peel	no	mature	5.47159
SRR6320572	ripe fruit peel	no	mature	2.26674
SRR7403504	fruit	uninfected	mature	5.8935
SRR7403506	fruit	uninfected	mature	6.17149
SRR7403507	fruit	uninfected	mature	5.52784
SRR7403500	fruit	infected with penicillium expansum	mature	2.11924
SRR7403501	fruit	infected with penicillium expansum	mature	1.08106
SRR7403508	fruit	infected with penicillium expansum	mature	1.70035
SRR7403502	fruit	infected with penicillium expansum	mature	1.09552
SRR7403503	fruit	infected with penicillium expansum	mature	1.89659
SRR7403505	fruit	infected with penicillium expansum	mature	0.879899
SRR1613973	Central seeds	no	20DAPF	7.26184
SRR1613974	Central seeds	no	20DAPF	6.93924
SRR1613975	Central seeds	no	20DAPF	6.69631
SRR1613976	Lateral seeds	no	20DAPF	5.6579
SRR1613977	Lateral seeds	no	20DAPF	6.49468
SRR1613978	Lateral seeds	no	20DAPF	6.2803
SRR3744786	stem	no	mature	2.4123
SRR3744787	stem	no	mature	2.9514
SRR3744772	stem	no	mature	2.73491
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.81123
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.21937
SRR1089478	leaf	Virus-free	plantlets	3.37274
SRR1089477	leaf	ASGV-infected	plantlets	6.26511
SRR767660	leaf	uninfected	fully developed	9.72445
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	10.224
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	12.5166
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	19.1836
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.3375
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	8.45315
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.00284
SRR6308182	young leaf	no	immature leaves	5.6203
SRR3744769	leaf	no	mature	4.58679
SRR3744770	leaf	no	mature	4.95972
SRR3744771	leaf	no	mature	5.24101
SRR5405145	leaf	no	mature	17.214
SRR6320561	leaf	no	mature	17.6924