Gene detail

Detail information of MD02G1172000 Annotation

Gene ID	Annotation
MD02G1172000	Protein of unknown function

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM1048

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1172000	mRNA	Chr02	14954675	14956830	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G36980.1	1	FUNCTIONS IN: molecular_function unknown
Arabidopsis thaliana	AT4G36980.2	1	FUNCTIONS IN: molecular_function unknown
Arabidopsis thaliana	AT4G36980.4	1	FUNCTIONS IN: molecular_function unknown
Arabidopsis thaliana	AT4G36980.3	0.989	FUNCTIONS IN: molecular_function unknown
Prunus persica	Prupe.7G133300.3.p	1	-
Prunus persica	Prupe.7G133300.2.p	1	-
Prunus persica	Prupe.7G133300.1.p	1	-
Prunus persica	Prupe.7G133300.5.p	1	-
Prunus persica	Prupe.7G133300.4.p	1	-
Pyrus communis	PCP024138.1	1	-
Pyrus x bretschneideri	Pbr025143.2	1	-
Rosa multiflora	Rmu_sc0001051.1_g000055.1	1	-
Fragaria vesca	mrna24033.1	1	-
Vitis vinifera	GSVIVT01022130001	1	-
Solanum lycopersicum	Solyc02g090850.2.1	1	-
Populus trichocarpa	Potri.007G044100.1	1	-
Nicotiana benthamiana	Niben101Scf02107g01005.1	1	arginine/serine-rich splicing factor [Medicago truncatula]
Oryza sativa	LOC_Os03g27840.1	1	"splicing factor, arginine/serine-rich 16, putative, expressed"

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
K13168	"splicing factor, arginine/serine-rich 16"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09750.5	DRY_EERY	41	174	2.30E-36

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	15.6647
SRR5252888	dormant buds	no	dormant buds(0 month)	38.2993
SRR5252889	dormant buds	no	dormant buds(0 month)	48.1056
SRR5252886	dormant buds	no	dormant buds(1 months)	50.4337
SRR5252887	dormant buds	no	dormant buds(1 months)	37.2178
SRR5252884	dormant buds	no	dormant buds(2 months)	46.5815
SRR5252882	dormant buds	no	dormant buds(3 months)	39.1345
SRR5252883	dormant buds	no	dormant buds(3 months)	24.5449
SRR5252880	dormant buds	no	dormant buds(4 months)	33.9095
SRR5252881	dormant buds	no	dormant buds(4 months)	34.6137
SRR5252878	bud break	no	bud break	42.671
SRR5252879	bud break	no	bud break	34.8611
SRR3744766	flower	no	mature	28.4523
SRR3744767	flower	no	mature	30.5977
SRR3744768	flower	no	mature	34.0699
SRR6308190	stigmas	no	open flowers	25.1352
SRR6308181	styles	no	open flowers	20.1538
SRR6308188	filaments	no	open flowers	13.615
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	16.7287
SRR6308192	pollen	no	open flowers	10.9031
SRR6308191	petals	no	open flowers	16.7708
SRR6308194	sepals	no	open flowers	26.2396
SRR6308193	receptacles	no	open flowers	23.2718
SRR6308189	ovaries	no	open flowers	22.1383
SRR3384922	fruit	no	1 week after full bloom	5.11252
SRR3384921	fruit	no	2 week after full bloom	5.45712
SRR3384920	fruit	no	3 week after full bloom	8.12128
SRR3384919	fruit	no	4 week after full bloom	6.69006
SRR3384923	fruit	no	5 week after full bloom	7.01624
SRR3384918	fruit	no	6 week after full bloom	7.87672
SRR3384917	fruit	no	8 week after full bloom	9.93851
SRR3384916	fruit	no	10 week after full bloom	8.93835
SRR3384915	fruit	no	12 week after full bloom	11.0164
SRR3384914	fruit	no	14 week after full bloom	12.0377
SRR3384913	fruit	no	16 week after full bloom	8.55738
SRR3384912	fruit	no	18 week after full bloom	11.4161
SRR3384911	fruit	no	19 week after full bloom	5.21041
SRR3384910	fruit	no	20 week after full bloom	14.4264
SRR768128	whole fruit	no	25 days post anthesis	26.7956
SRR768129	whole fruit	no	35 days post anthesis	5.06045
SRR768130	whole fruit	no	60 days post anthesis	5.34198
SRR768131	whole fruit	no	87 days post anthesis	11.9446
SRR7343308	immature fruit flesh	no	immature	18.4686
SRR7343309	immature fruit flesh	no	immature	12.1518
SRR6320494	ripe fruit flesh	no	mature	41.2039
SRR5405143	ripe fruit peel	no	mature	23.7137
SRR6320572	ripe fruit peel	no	mature	51.4698
SRR7403504	fruit	uninfected	mature	18.7071
SRR7403506	fruit	uninfected	mature	20.5102
SRR7403507	fruit	uninfected	mature	21.1416
SRR7403500	fruit	infected with penicillium expansum	mature	14.0468
SRR7403501	fruit	infected with penicillium expansum	mature	13.2925
SRR7403508	fruit	infected with penicillium expansum	mature	15.136
SRR7403502	fruit	infected with penicillium expansum	mature	13.807
SRR7403503	fruit	infected with penicillium expansum	mature	14.6691
SRR7403505	fruit	infected with penicillium expansum	mature	17.7501
SRR1613973	Central seeds	no	20DAPF	5.77024
SRR1613974	Central seeds	no	20DAPF	7.58007
SRR1613975	Central seeds	no	20DAPF	5.93416
SRR1613976	Lateral seeds	no	20DAPF	5.00808
SRR1613977	Lateral seeds	no	20DAPF	6.62939
SRR1613978	Lateral seeds	no	20DAPF	6.4836
SRR3744786	stem	no	mature	39.5059
SRR3744787	stem	no	mature	37.0821
SRR3744772	stem	no	mature	43.3486
SRX765691	seedling shoot apex	no	4-6 week old seedling	20.463
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	24.5758
SRR1089478	leaf	Virus-free	plantlets	4.90092
SRR1089477	leaf	ASGV-infected	plantlets	5.38559
SRR767660	leaf	uninfected	fully developed	5.38342
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	9.0881
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.07504
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.91583
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.78899
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.16841
SRR6308182	young leaf	no	immature leaves	14.4839
SRR3744769	leaf	no	mature	32.8026
SRR3744770	leaf	no	mature	35.2606
SRR3744771	leaf	no	mature	36.3695
SRR5405145	leaf	no	mature	29.3718
SRR6320561	leaf	no	mature	20.4714