Gene detail

Detail information of MD02G1182500 Annotation

Gene ID	Annotation
MD02G1182500	Phototropic-responsive NPH3 family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0674	pentatricopeptide repeat domain-containing protein 1 dolichyl-diphosphooligosaccharide-protein glycotransferase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1182500	mRNA	Chr02	16466479	16469876	+

Sequences

CDS:

MD02G1182500

CACACCATAACCCCTACATCTTTTTCTTTTTCTTTTACCCATCTTCCTCCCAATAATATCACAAATGCCACTCGTTCAGTTCCCTCCTCCTACCCCTTGACTTGTATTCACTCTCTAGTTTCTCTCCCCAAAGAAGAAGGCATTTTGGGTAATTCATTAAGTCTGATGATTACTTGTGAAGATTGAAGCTGGATAATGCAGGTTTATTATTAGTGCTTCAATATTTTCTGTTCTTATTATTGCAGAATGATTGTTTCACTTCTTTATATATTCAAGGAAGTTTGAATGATAAAGGTCAAAACGAAACAAAAACGTACTGAAAACAGCGTACGTAGGGTTTTTGCTTCACTACAGTAAAATTGCAGCAGCTCAATCCTTCTCTCTCCTCTCTCTCTCTCTCTCTCTGTGCTATTATTTGATGTACTATATGATGGAGATGGAGAACTGAACATGATAAACATTCAACTGTTACTTCCATGGCGGATATCGAACTTGGCGAGGAGAGTACTGCACCCACTACCACAGCCAACATGTCCTTTAAGAAGAAGGAGCTTCTTTCTTCTGCCTTGAAGAGAACTAGTGAATGGATTTTTTCGCAGGAGATTCCGAGCGATATTAGTATTAATGTTGGAGGGGTTTCCTTCTCATTGCACAAGTTCCCTTTGATTTCGAAGTGTGGACACATAAGGAAACTGATATCAGAATCGAGTGATGCTGCTGATCTATCTGTCATTGAACTATCTGATGTTCCGGGCGGATCAGAAGCATTTGAGCTTGCAGCAAAATTCTGCTATGGAATAAATTTCGAGATAAGCACAGAGAACATCGCAATGCTCCGATGTGTGGCAGAGTATCTTCTGATGACTGAGGACTACGGGGTTGGAAACCTTGTGGGAAGAGCTGATGCATACTTAAATGAAGTGGCATTGAAGAGCCTAGCGGGTGCAGTTACTGTTTTGCACATGTCAGAAAGTTTCCTCCCAATGGCGGAGAAGGTAAAATTAGTGAACCGCTGCATAGATGCAATTGCTTTTATAGCCTGCAAAGAGAGCCAGTTCAGTGTGTCCAGTAGGGCTGATGGCGGCAATGAGGGTGCAGTTTCTTCAGCTGTGTATCATCCAAAGCCTGTTGTGGATTGGTGGGCTGAAGACTTAATTGTTCTTAGAATCGATATGTTCCAACGTGTTATGATTGCAATGATGGCAAGAGGGTTTAAGCAATATGCTCTCGGACCAGTACTCATGCTCTATGCGCAGAAATCGCTAAGAGGTTTGGAAATATTTGGAAAGGGGAGGAAGAAAATCGAGCCGCGACAAGAGCACGAGAAGAGGGTTGTCTTAGAAACAATTGTGAGTCTTCTGCCAAGGGCGAAAAATGCAATGTCGGTTAGCTTTCTTTCCATGCTTCTTCGTGCTGCGAAAACCCTGGAGACAACAGTTGCTTGCCAGCTAGATTTGGAGAAGAGAATGGGGTTTCAATTGGCACAGGCTGTTTTAGATGATCTCTTGATTCCATCATATTCCTATACCGGGGACACATTGCTTGATGTCGACACTGTGCAAAGGATCGTGACGAATTACCTTGAATATGAAATGCAGGGGAGCCGTTTGGGACATAATGCAGAGGATGATTTTGGTTCTCCTCCGCCGACTGACATGGAACGTGTCGGAAAGCTAATGGAGAACTACCTGGCTGAAATAGCCACTGACCGTAACGTATCTGTCTCAAAGTTCATAGGCATTGCTGAACTAATTCCAGAACAATCAAGGGAAACAGAAGATGGCATGTATAGAGCAATAGATATCTACCTAAAGGCTCATCCTGCTCTGAGTGATATGGAGAGAAAGAAAGTGTGCAGTATGATGGACTGCCAGAAACTTTCGCGCGAGGCCTGCGCTCACGCTGCGCAGAATGACCGGCTTCCTGTTCAAACTGTTGTACAAGTGCTATACTATGAGCAGCAGCGTCTTCGAGACGTCATGAATGGCAATTCCATTGGTGCTGAATCCTCTGTTCTTCCATCCAAAGGGAGCTTATACTCCACTGATATCCACCCAGTTCCTGATGAGCTCACCATCTTGCGCAGACAAAACGAGGAGCTGAAAATGGAATTGGTGAAGATGAAAATGAAACTGAAAGAACTCGAAACGTCTACTACGAGAACAGCAATGATCAGTCCAATGGGAAACACTCCAACATCTGCTGACAAACCTCCGCTGCCTCGAAAATCATTCATAAACTCAGTATCGAAAAAACTTGGGAAGCTTTCTCCCTTTGTGCGTGCAGATGGAGTGACACCTACCGGTGCCAAAGGCCGAACAAAACCTGCCAAAGATCGGCGGCATTCAATTTCCTGAAGCTTCAGTGTGTAACTGAGCTCTATGCTGCTTTATGAGAAGTCTAAATTCAATTGCCTTTGTTTGCTTTGTTTAGGCTTGGGATAATTTGTAACTTGAATTTCTAATTTGTTCCATCTTTGTTGTGCTTTGTGTGATGTCATTGTAAATAACATTGCCACTTCGCTTTGAATAAGATTACACGATTTAATGGCATTGAGTATAAAAGAGTGGA

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	BTB

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G67385.1	1	Phototropic-responsive NPH3 family protein
Prunus persica	Prupe.6G223600.1.p	1	Phototropic-responsive NPH3 family protein
Prunus persica	Prupe.6G223600.2.p	0.815	Phototropic-responsive NPH3 family protein
Pyrus communis	PCP007470.1	1	-
Pyrus x bretschneideri	Pbr035188.1	1	-
Rosa multiflora	Rmu_sc0005152.1_g000007.1	1	-
Rubus occidentalis	Ro01_G04204	1	-
Vitis vinifera	GSVIVT01000146001	1	Phototropic-responsive NPH3 family protein
Solanum lycopersicum	Solyc02g092560.2.1	1	Phototropic-responsive NPH3 family protein
Solanum lycopersicum	Solyc07g043130.2.1	1	Phototropic-responsive NPH3 family protein
Populus trichocarpa	Potri.007G053200.1	1	Phototropic-responsive NPH3 family protein
Nicotiana benthamiana	Niben101Scf03549g00004.1	1	Phototropic-responsive NPH3 family protein LENGTH=604
Oryza sativa	LOC_Os03g10880.2	1	"BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"
Zea mays	GRMZM2G004523_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.27	BTB	40	130	4.00E-05

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	18.1987
SRR5252888	dormant buds	no	dormant buds(0 month)	3.94429
SRR5252889	dormant buds	no	dormant buds(0 month)	2.28463
SRR5252886	dormant buds	no	dormant buds(1 months)	1.51109
SRR5252887	dormant buds	no	dormant buds(1 months)	1.77504
SRR5252884	dormant buds	no	dormant buds(2 months)	4.58957
SRR5252882	dormant buds	no	dormant buds(3 months)	3.45232
SRR5252883	dormant buds	no	dormant buds(3 months)	6.15917
SRR5252880	dormant buds	no	dormant buds(4 months)	14.3222
SRR5252881	dormant buds	no	dormant buds(4 months)	15.8221
SRR5252878	bud break	no	bud break	18.841
SRR5252879	bud break	no	bud break	10.8567
SRR3744766	flower	no	mature	22.8684
SRR3744767	flower	no	mature	23.5116
SRR3744768	flower	no	mature	23.1034
SRR6308190	stigmas	no	open flowers	11.0417
SRR6308181	styles	no	open flowers	14.6333
SRR6308188	filaments	no	open flowers	5.86734
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	5.27034
SRR6308192	pollen	no	open flowers	0.409629
SRR6308191	petals	no	open flowers	9.56484
SRR6308194	sepals	no	open flowers	5.50327
SRR6308193	receptacles	no	open flowers	2.67981
SRR6308189	ovaries	no	open flowers	9.09086
SRR3384922	fruit	no	1 week after full bloom	1.26735
SRR3384921	fruit	no	2 week after full bloom	1.88627
SRR3384920	fruit	no	3 week after full bloom	0.875741
SRR3384919	fruit	no	4 week after full bloom	0.892751
SRR3384923	fruit	no	5 week after full bloom	0.557156
SRR3384918	fruit	no	6 week after full bloom	1.41767
SRR3384917	fruit	no	8 week after full bloom	2.17467
SRR3384916	fruit	no	10 week after full bloom	1.49563
SRR3384915	fruit	no	12 week after full bloom	0.426017
SRR3384914	fruit	no	14 week after full bloom	1.17596
SRR3384913	fruit	no	16 week after full bloom	1.38509
SRR3384912	fruit	no	18 week after full bloom	1.01879
SRR3384911	fruit	no	19 week after full bloom	2.08905
SRR3384910	fruit	no	20 week after full bloom	0.369344
SRR768128	whole fruit	no	25 days post anthesis	1.56626
SRR768129	whole fruit	no	35 days post anthesis	1.30048
SRR768130	whole fruit	no	60 days post anthesis	0.351673
SRR768131	whole fruit	no	87 days post anthesis	0.476473
SRR7343308	immature fruit flesh	no	immature	0.561163
SRR7343309	immature fruit flesh	no	immature	0.373132
SRR6320494	ripe fruit flesh	no	mature	0.89851
SRR5405143	ripe fruit peel	no	mature	1.14589
SRR6320572	ripe fruit peel	no	mature	1.25278
SRR7403504	fruit	uninfected	mature	0.810249
SRR7403506	fruit	uninfected	mature	0.781483
SRR7403507	fruit	uninfected	mature	0.684863
SRR7403500	fruit	infected with penicillium expansum	mature	0.0455245
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.0376534
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.929365
SRR1613974	Central seeds	no	20DAPF	0.99032
SRR1613975	Central seeds	no	20DAPF	0.937621
SRR1613976	Lateral seeds	no	20DAPF	0.893213
SRR1613977	Lateral seeds	no	20DAPF	0.901504
SRR1613978	Lateral seeds	no	20DAPF	1.48756
SRR3744786	stem	no	mature	17.6881
SRR3744787	stem	no	mature	16.191
SRR3744772	stem	no	mature	15.8781
SRX765691	seedling shoot apex	no	4-6 week old seedling	10.1863
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	7.02446
SRR1089478	leaf	Virus-free	plantlets	18.692
SRR1089477	leaf	ASGV-infected	plantlets	20.2325
SRR767660	leaf	uninfected	fully developed	22.5016
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	20.406
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	32.2149
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	3.20262
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	9.33963
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	12.2044
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	18.4384
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	20.3886
SRR6308182	young leaf	no	immature leaves	4.85169
SRR3744769	leaf	no	mature	28.7967
SRR3744770	leaf	no	mature	30.9768
SRR3744771	leaf	no	mature	30.7606
SRR5405145	leaf	no	mature	21.82
SRR6320561	leaf	no	mature	19.8206