Gene detail

Detail information of MD02G1185300 Annotation

Gene ID	Annotation
MD02G1185300	Phototropic-responsive NPH3 family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1185300	mRNA	Chr02	16826500	16831141	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	BTB

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G49900.1	1	Phototropic-responsive NPH3 family protein
Arabidopsis thaliana	AT3G49900.2	0.992	Phototropic-responsive NPH3 family protein
Prunus persica	Prupe.6G221500.1.p	1	Phototropic-responsive NPH3 family protein
Pyrus communis	PCP022121.1	1	-
Pyrus x bretschneideri	Pbr001041.1	1	-
Rosa multiflora	Rmu_co8394919.1_g000001.1	1	-
Rubus occidentalis	Ro01_G04233	1	-
Fragaria vesca	mrna05752.1	1	Phototropic-responsive NPH3 family protein
Vitis vinifera	GSVIVT01000112001	1	Phototropic-responsive NPH3 family protein
Vitis vinifera	GSVIVT01000120001	0.677	Phototropic-responsive NPH3 family protein
Solanum lycopersicum	Solyc02g092420.2.1	1	Phototropic-responsive NPH3 family protein
Populus trichocarpa	Potri.005G149400.1	1	Phototropic-responsive NPH3 family protein
Nicotiana benthamiana	Niben101Scf00991g04002.1	1	BTB/POZ domain-containing protein
Oryza sativa	LOC_Os07g39850.1	1	expressed protein
Zea mays	GRMZM2G180490_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.27	BTB	50	134	1.60E-07

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	8.17801
SRR5252888	dormant buds	no	dormant buds(0 month)	3.40351
SRR5252889	dormant buds	no	dormant buds(0 month)	4.24607
SRR5252886	dormant buds	no	dormant buds(1 months)	3.65833
SRR5252887	dormant buds	no	dormant buds(1 months)	1.41385
SRR5252884	dormant buds	no	dormant buds(2 months)	2.54016
SRR5252882	dormant buds	no	dormant buds(3 months)	4.15171
SRR5252883	dormant buds	no	dormant buds(3 months)	2.05636
SRR5252880	dormant buds	no	dormant buds(4 months)	9.4169
SRR5252881	dormant buds	no	dormant buds(4 months)	12.0725
SRR5252878	bud break	no	bud break	13.3189
SRR5252879	bud break	no	bud break	14.9252
SRR3744766	flower	no	mature	6.84739
SRR3744767	flower	no	mature	7.03759
SRR3744768	flower	no	mature	6.59573
SRR6308190	stigmas	no	open flowers	4.35749
SRR6308181	styles	no	open flowers	9.04965
SRR6308188	filaments	no	open flowers	22.8931
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.60232
SRR6308192	pollen	no	open flowers	0.569137
SRR6308191	petals	no	open flowers	9.78799
SRR6308194	sepals	no	open flowers	4.74285
SRR6308193	receptacles	no	open flowers	3.07737
SRR6308189	ovaries	no	open flowers	14.3306
SRR3384922	fruit	no	1 week after full bloom	5.21163
SRR3384921	fruit	no	2 week after full bloom	4.20705
SRR3384920	fruit	no	3 week after full bloom	5.13561
SRR3384919	fruit	no	4 week after full bloom	3.34452
SRR3384923	fruit	no	5 week after full bloom	4.62298
SRR3384918	fruit	no	6 week after full bloom	3.82887
SRR3384917	fruit	no	8 week after full bloom	2.19927
SRR3384916	fruit	no	10 week after full bloom	3.32034
SRR3384915	fruit	no	12 week after full bloom	2.78656
SRR3384914	fruit	no	14 week after full bloom	2.038
SRR3384913	fruit	no	16 week after full bloom	0.939295
SRR3384912	fruit	no	18 week after full bloom	1.27325
SRR3384911	fruit	no	19 week after full bloom	0.798474
SRR3384910	fruit	no	20 week after full bloom	0.625183
SRR768128	whole fruit	no	25 days post anthesis	6.64961
SRR768129	whole fruit	no	35 days post anthesis	4.2061
SRR768130	whole fruit	no	60 days post anthesis	2.05681
SRR768131	whole fruit	no	87 days post anthesis	2.13796
SRR7343308	immature fruit flesh	no	immature	2.08683
SRR7343309	immature fruit flesh	no	immature	1.30124
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.290948
SRR6320572	ripe fruit peel	no	mature	0.434384
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0.0307733
SRR7403500	fruit	infected with penicillium expansum	mature	0.126826
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.0678385
SRR7403502	fruit	infected with penicillium expansum	mature	0.104898
SRR7403503	fruit	infected with penicillium expansum	mature	0.0585813
SRR7403505	fruit	infected with penicillium expansum	mature	0.0526576
SRR1613973	Central seeds	no	20DAPF	27.963
SRR1613974	Central seeds	no	20DAPF	26.981
SRR1613975	Central seeds	no	20DAPF	26.3408
SRR1613976	Lateral seeds	no	20DAPF	26.4706
SRR1613977	Lateral seeds	no	20DAPF	28.1317
SRR1613978	Lateral seeds	no	20DAPF	26.7719
SRR3744786	stem	no	mature	0.789498
SRR3744787	stem	no	mature	0.500599
SRR3744772	stem	no	mature	0.35949
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.65814
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.4934
SRR1089478	leaf	Virus-free	plantlets	6.96998
SRR1089477	leaf	ASGV-infected	plantlets	6.65928
SRR767660	leaf	uninfected	fully developed	4.13922
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	1.90486
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	6.74516
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.12295
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.30616
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.86906
SRR6308182	young leaf	no	immature leaves	11.9545
SRR3744769	leaf	no	mature	0.97295
SRR3744770	leaf	no	mature	0.913992
SRR3744771	leaf	no	mature	1.00679
SRR5405145	leaf	no	mature	7.10723
SRR6320561	leaf	no	mature	5.12885