Gene detail

Detail information of MD02G1194500 Annotation

Gene ID	Annotation
MD02G1194500	peroxisomal NAD-malate dehydrogenase 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1194500	mRNA	Chr02	18555695	18566704	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G22780.1	1	PMDH1\|peroxisomal NAD-malate dehydrogenase 1
Prunus persica	Prupe.6G212400.1.p	1	peroxisomal NAD-malate dehydrogenase 1
Pyrus communis	PCP004488.1	1	-
Pyrus x bretschneideri	Pbr018827.2	1	-
Rosa multiflora	Rmu_sc0000332.1_g000042.1	1	-
Rubus occidentalis	Ro01_G11185	1	-
Fragaria vesca	mrna05605.1	1	peroxisomal NAD-malate dehydrogenase 1
Vitis vinifera	GSVIVT01006474001	1	peroxisomal NAD-malate dehydrogenase 1
Oryza sativa	LOC_Os03g56280.1	1	"lactate/malate dehydrogenase, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0044262	cellular carbohydrate metabolic process	biological_process
GO:0030060	L-malate dehydrogenase activity	molecular_function
GO:0055114	oxidation-reduction process	biological_process
GO:0006108	malate metabolic process	biological_process

KEGG

KO	Description	Enzyme
K00026	malate dehydrogenase	EC:1.1.1.37

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02866.14	Ldh_1_C	194	358	5.70E-48

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	35.6709
SRR5252888	dormant buds	no	dormant buds(0 month)	8.35608
SRR5252889	dormant buds	no	dormant buds(0 month)	11.6048
SRR5252886	dormant buds	no	dormant buds(1 months)	13.1598
SRR5252887	dormant buds	no	dormant buds(1 months)	11.9411
SRR5252884	dormant buds	no	dormant buds(2 months)	11.8002
SRR5252882	dormant buds	no	dormant buds(3 months)	9.08755
SRR5252883	dormant buds	no	dormant buds(3 months)	15.1415
SRR5252880	dormant buds	no	dormant buds(4 months)	9.1749
SRR5252881	dormant buds	no	dormant buds(4 months)	11.6469
SRR5252878	bud break	no	bud break	12.6048
SRR5252879	bud break	no	bud break	11.9972
SRR3744766	flower	no	mature	34.4029
SRR3744767	flower	no	mature	32.0494
SRR3744768	flower	no	mature	31.8459
SRR6308190	stigmas	no	open flowers	40.0615
SRR6308181	styles	no	open flowers	36.3363
SRR6308188	filaments	no	open flowers	31.4548
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	32.121
SRR6308192	pollen	no	open flowers	33.0977
SRR6308191	petals	no	open flowers	27.5363
SRR6308194	sepals	no	open flowers	25.6085
SRR6308193	receptacles	no	open flowers	37.6216
SRR6308189	ovaries	no	open flowers	31.6243
SRR3384922	fruit	no	1 week after full bloom	22.9011
SRR3384921	fruit	no	2 week after full bloom	22.808
SRR3384920	fruit	no	3 week after full bloom	34.1785
SRR3384919	fruit	no	4 week after full bloom	29.3983
SRR3384923	fruit	no	5 week after full bloom	31.3953
SRR3384918	fruit	no	6 week after full bloom	25.3591
SRR3384917	fruit	no	8 week after full bloom	28.3576
SRR3384916	fruit	no	10 week after full bloom	31.2612
SRR3384915	fruit	no	12 week after full bloom	36.7321
SRR3384914	fruit	no	14 week after full bloom	31.1594
SRR3384913	fruit	no	16 week after full bloom	33.837
SRR3384912	fruit	no	18 week after full bloom	34.7158
SRR3384911	fruit	no	19 week after full bloom	38.1884
SRR3384910	fruit	no	20 week after full bloom	42.6679
SRR768128	whole fruit	no	25 days post anthesis	25.1299
SRR768129	whole fruit	no	35 days post anthesis	26.4847
SRR768130	whole fruit	no	60 days post anthesis	25.4364
SRR768131	whole fruit	no	87 days post anthesis	23.4376
SRR7343308	immature fruit flesh	no	immature	23.6667
SRR7343309	immature fruit flesh	no	immature	23.3232
SRR6320494	ripe fruit flesh	no	mature	33.2825
SRR5405143	ripe fruit peel	no	mature	28.3693
SRR6320572	ripe fruit peel	no	mature	25.7278
SRR7403504	fruit	uninfected	mature	40.8736
SRR7403506	fruit	uninfected	mature	40.3624
SRR7403507	fruit	uninfected	mature	40.1027
SRR7403500	fruit	infected with penicillium expansum	mature	81.2888
SRR7403501	fruit	infected with penicillium expansum	mature	78.5943
SRR7403508	fruit	infected with penicillium expansum	mature	83.6959
SRR7403502	fruit	infected with penicillium expansum	mature	73.0473
SRR7403503	fruit	infected with penicillium expansum	mature	81.7847
SRR7403505	fruit	infected with penicillium expansum	mature	76.816
SRR1613973	Central seeds	no	20DAPF	29.6093
SRR1613974	Central seeds	no	20DAPF	30.1837
SRR1613975	Central seeds	no	20DAPF	30.2212
SRR1613976	Lateral seeds	no	20DAPF	31.2309
SRR1613977	Lateral seeds	no	20DAPF	32.919
SRR1613978	Lateral seeds	no	20DAPF	30.4231
SRR3744786	stem	no	mature	37.4626
SRR3744787	stem	no	mature	35.9593
SRR3744772	stem	no	mature	37.6136
SRX765691	seedling shoot apex	no	4-6 week old seedling	17.13
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	23.2304
SRR1089478	leaf	Virus-free	plantlets	32.0556
SRR1089477	leaf	ASGV-infected	plantlets	28.4068
SRR767660	leaf	uninfected	fully developed	14.7631
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	22.5032
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	15.849
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	22.4362
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	12.0877
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	20.5959
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	21.0286
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	23.8671
SRR6308182	young leaf	no	immature leaves	15.227
SRR3744769	leaf	no	mature	31.6766
SRR3744770	leaf	no	mature	28.3417
SRR3744771	leaf	no	mature	30.4326
SRR5405145	leaf	no	mature	20.3158
SRR6320561	leaf	no	mature	17.2078